Search results

From 2009.igem.org

You searched for Atom.xml (all pages starting with "Atom.xml" | all pages that link to "Atom.xml")

No page title matches

There is no page titled "Atom.xml".

For more information about searching 2009.igem.org, see Help.

Showing below 17 results starting with #1.

Page text matches

Team:Groningen/Glossary
... n state is the hypothetical charge that an atom would have if all bonds to atoms of different elements were 100% ionic.

6 KB (943 words) - 20:18, 21 October 2009
Team:EPF-Lausanne/Analysis
Here we will conﬁrm that the kinetic energy distribution of the atoms in a system corresponds to the Maxwell distribution for a given temperatu ... ... ust need VMD to make a file containing the masses and velocities for every atom.

38 KB (5625 words) - 09:21, 21 September 2009
Team:Groningen/Project/Accumulation
... protein, consisting of a α-helix and an anti-parallel β-sheet. The zinc atom (green) is bound by two histidines and two cysteines.</center> ... e amount of Krypton and Selenium for this correction. In the CCT all multi-atomic compounds are supposed to be decomposed, therefore no interference will ...

35 KB (5337 words) - 22:10, 21 October 2009
Team:EPF-Lausanne/Modeling
... For this purpose we need to be able to calculate the forces acting on the atoms, and these are usually derived from a potential energy. ... gy can be calculated from the sum of energy contributions between pairs of atoms.

6 KB (940 words) - 08:34, 21 September 2009
Team:EPF-Lausanne/Modeling/Simulation
:prot.pdb : pdb after removing unwanted atoms (step 3 on this page) ... :''.pdb from the web → .pdb file ready for vmd processing (removing some atoms)''

10 KB (1671 words) - 15:23, 19 October 2009
Team:EPF-Lausanne/Results
:Interestingly, in the dark state we were able to find that the sulfur atom of this cystein point 30% of the time toward the cofactor, FMN (molecule t ... ... was completely expected because after a covalent bonding with a big set of atom such as the FMN, the cystein's side chain is less free to move.

13 KB (2062 words) - 23:20, 21 October 2009
Team:EPF-Lausanne/Modeling/RunSimulation
... nstant (NPT step). This is a kind of homogenization of the distribution of atoms inside our box. This is also a relaxation step, with atom number, volume and temperature constant.

4 KB (641 words) - 15:24, 19 October 2009
Team:MoWestern Davidson/project physicalmodel
... each atom within the molecule. It also includes portions describing which atoms combine to form nucleotides or amino acids, the locations of hydrogen bon ... ... mportantly the Cartesian space coordinate triples that code for individual atom placement. The PDB file 1EHZ is about ninety 8½″×11&Pri ...

9 KB (1488 words) - 15:14, 21 October 2009
Team:Aberdeen Scotland/OurTeam/TeamMembers
"How do you split an atom?"

7 KB (1103 words) - 02:50, 13 October 2009
Team:EPF-Lausanne/Scripts
... define which residues are taken in consideration, it has no impact on wich atoms are selected. *If you want to change which atoms are taken in consideration for RMSD, you'll have to update the selection ...

5 KB (895 words) - 15:28, 19 October 2009
Team:EPF-Lausanne/Modeling overview
... d without light activation (ground state, so-called dark state), calculate atom and residue movements of particular/interesting LOV domain regions, and fi ... ... For this purpose we need to be able to calculate the forces acting on the atoms, and these are usually derived from a potential energy.

13 KB (1997 words) - 16:03, 21 October 2009
Team:Michigan/Ian Faulkner
<font size=3>Atom #1: "I think I lost an electron." <br>Atom #2: "Are you sure?"

1 KB (170 words) - 01:25, 19 September 2009
Team:EPF-Lausanne/Analysis methods
Here we will conﬁrm that the kinetic energy distribution of the atoms in a system corresponds to the Maxwell distribution for a given temperatu ... ... ust need VMD to make a file containing the masses and velocities for every atom.

36 KB (5624 words) - 19:21, 21 October 2009
Team:EPF-Lausanne/Results/EDS
... fur atom of the cystein and the FMN carbon which is attacked by the sulfur atom upon light activation: We can define two conformation, depending whether or not the sulfur atom is pointing toward the cofactor:

11 KB (1794 words) - 21:40, 21 October 2009
Team:EPF-Lausanne/Results/ELS
It takes into account the scalar distance between atoms comparing two structures, after that these structures had been superposed ... ... ve a lot which is completely normal due to its bonding with the C4A carbon atom of the FMN.-->

5 KB (811 words) - 14:59, 21 October 2009
Team:Team:Freiburg software/Code/qooxdoo/Application.js
//A atom that shows loading state var loadingAtom = new qx.ui.basic.Atom("State", "qooxwaveclient/ajax-loader-large.gif");

26 KB (3004 words) - 11:54, 21 October 2009
Team:NYMU-Taipei/Project/Receptor/Antibody
[[Image:NYNU HAscFv3.PNG|none|450px|thumb|Atom interaction between scFv and HA]]

12 KB (1727 words) - 03:45, 22 October 2009