Team:KULeuven/23 September 2009

From 2009.igem.org

Project progress

Progress of parts

[edit] Blue Light Receptor

  1. measurements of the liquid cultures from 22/09 were made. the empty top10, and standard promoter I20260 were measured. then, at different times likA were measured.

we concluded the following from our measurements:

  • the gfp at time 0 was already pretty high
  • the level of gfp did not change during lighting.
  • the level of gfp measured was not higher then the gfp signal from I20260.

after having read some of the articles about this system again we made some new discoveries about the receptor (YcgF), the repressor (YcgE) and the promotor (blp):

  • temperature seems to be more important then we first suspected. not only does temperature influence the expression of YcgF/E but it also influences the dimerization of YcgF. It seems that the colder the temperature, the easier dimerization (in the absence of light) happens.
  • this finding made us conclude the following about temperatures in our experimental set up.
    • growing cells at 37°c: at this temperature the repressor has a very low expression rate. thus, the number of plasmids containing a promoter (15-30) is too big compared to the amount of repressor.
    • putting cells in 16°c: the amount of repressor produces might be enough to cover all the promoters but there will be at least as much receptor that is dimerized and tus active to undo this repression.
    • conclusion: growing aty 25° gives the possibility of creating enough repressor/receptor without having the receptor in an active state and removing the repressor activity.

[edit] Vanillin Production

  • Miniprep of PAMS&Co
part concentration 260/280 260/230
PAMSCO1 115,6
PAMSCO2 102,2
PAMSCO3 71,0
PAMSCO4 137,1
PAMSCO5 127,2
PAMSCO6 106,6
  • All 6 had the correct size
  • First vanille experiment
    • 1 flask with PEFT cells added 80mg Ferrulic accid
    • 1 flask with EFT cells added 80 mg ferrulic acid
    • Took samples at 0, 0', 20, 40, 60, 90, 120, 180, 240 minutes
    • Centrifuged the samples and transfer the supernatant to a tube

[edit] Vanillin Receptor

[edit] Key/Lock/Anti-Key