Team:Freiburg bioware/Notebook/June

  FREiGEM  

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Transformation was done with RV and the two vectors (pET SUMO/ pET28a). We made a control plate as well, also we made two plates per vector (500&mu;l and 10&mu;l of cell suspension). Plates are grown over night at 37&deg;C. Inoculation in LB+antibiotic will be done from Christoph. 3rd June 2009, 09:00- 13:30 o'clock; Christoph Attendees: Christoph

transformed strains (RV308+Tt and RV308+Aa). I only picked colonies from the 10&mu;l plates. 12-16 hours growth over night. Had a discussion with Sven where we decidet to rather sequenz the plasmids, than to do a digestion and a gel. I send a sample of both plasmids to GATC to sequenz them. I decidet to use their standard promotors T7 and pRSET-RT as they were flanking the inserts of both plasmids (and they are for free ;).
 * Inoculation of 2x3ml LB+Kan with a single colony of the two

4th June 2009, 13:30- 14:30 o'clock; Christoph Attendees: Christoph

Made gycerol stocks from the cultures. Sequenzes also arrived, I`ll post them later. Laborjournal#24th april 12:30 - 18:00 o'clock Manuel

8th June 2009, 11:30-12:30 o'clock; Laura Sent the order for the two Fok heterodimers to Mr. Gene

The two sequences including the SacI/KpnI restriction and prefix and suffix sites are the following:


 * active FOK:

GAGCTC

GAATTCGCGGCCGCTTCTAGATGGCCGGC

AAATCTGAACTGGAGGAGAAAAAATCCGAGCTGCGCCACAAACTGAAATATGTGCCTCACGAGTATATCGAACTGATCGA GATCGCCCGTAATAGTACCCAAGACCGTATCCTGGAAATGAAAGTGATGGAGTTCTTCATGAAAGTCTATGGCTATCGTG GCAAACATCTGGGTGGTAGCCGTAAACCTGATGGTGCCATTTATACCGTTGGTTCCCCGATCGATTATGGCGTTATCGTT GATACCAAAGCCTATAGCGGGGGTTATAACCTGCCAATTGGTCAGGCTGATGAGATGCAGCGTTATGTGAAAGAGAACCA GACTCGTAACAAACACATCAACCCGAACGAATGGTGGAAAGTGTATCCGTCAAGCGTTACAGAGTTCAAATTCCTGTTCG TGAGCGGCCATTTTAAAGGCAACTATAAAGCACAGCTGACCCGTCTGAACCATAAAACCAATAGCAATGGCGCCGTTCTG TCAGTAGAAGAGCTGCTGATTGGCGGTGAAATGATCAAAGCCGGGACCCTGACACTGGAAGAAGTTCGCCGTAAATTCAA CAATGGGGAGATCAATTTT

ACCGGTTAATACTAGTAGCGGCCGCCTGCAG

GGTACC


 * inactive FOK:

GAGCTC

GAATTCGCGGCCGCTTCTAGATGGCCGGC

AAATCTGAACTGGAGGAGAAAAAATCCGAGCTGCGCCACAAACTGAAATATGTGCCTCACGAGTATATCGAACTGATCGA GATCGCCCGTAATAGTACCCAAGACCGTATCCTGGAAATGAAAGTGATGGAGTTCTTCATGAAAGTCTATGGCTATCGTG GCAAACATCTGGGTGGTAGCCGTAAACCAGCAGGTGCCATTTATACCGTTGGTTCCCCGATCGATTATGGCGTTATCGTG GCCACAAAAGCGTATTCTGGCGGTTATAATCTGCCGATTGGTCAGGCTGATGAGATGGAACGTTATGTGGAAGAGAATCA GACCCGTAACAAACATCTGAACCCGAACGAATGGTGGAAAGTGTATCCGTCAAGTGTCACCGAGTTCAAATTTCTGTTCG TGAGCGGCCACTTTAAAGGCAACTATAAAGCCCAGCTGACTCGTCTGAACCATATCACCAATAGCAATGGGGCAGTGCTG AGTGTTGAGGAACTGCTGATCGGTGGAGAAATGATCAAAGCAGGCACCCTGACTCTGGAAGAAGTTCGCCGTAAATTCAA CAATGGCGAGATCAATTTT

ACCGGTTAATACTAGTAGCGGCCGCCTGCAG

GGTACC

9th June 2009, 10:00-11:00 o'clock; Laura the sequence of the vector of mr. gene, pMA, was checked to exclude the iGEM restriction sites

the offer with the iGEM fitted prices was received and the order was finally accomplished

data for ordering at mr. gene:

9th June 2009, 13:00-14:30 o'clock; Manuel Attendees: Kristian, Sascha, Christoph, Manuel
 * laborbook

Talk about the next steps of the Argo-group:

eine gro&szlig;e Kultur animpfen, bis zu einer OD von 0,5 - 0,8 wachsen lassen, induzieren und nach ca. 4h sollte schon die ersten Expressionsprodukte nachweisbar sein.
 * kleine &Uuml;bernachtkultur ansetzen, am n&auml;chsten Tag

Ni-S&auml;ule.
 * Aufschluss: sonifizieren oder Frenchpress, zentrifugieren,

von Verklumpungen, vielleicht DTT zusetzen (sollte man nochmal nachlesen wie das f&uuml;r die Kristallisation gemacht wurde)
 * noch nachzupr&uuml;fen: freie SH-Gruppen im Protein? evtl. Gefahr

Punkt, MW, ...usw)
 * Datenblatt erstellen f&uuml;r das Argo-Protein (isoelektrischer

Protein) und ob die Ziel-DNA geschnitten wurde. Kristian erw&auml;hnt die Fluoreszenz-Polarisation (Ger&auml;t vorhanden im Labor).
 * Messmethoden um herauszufinden ob die DNA gebunden ist (ans

finden. Am besten w&auml;re wenn das Protein zwei Mal schneidet, es w&uuml;rde aber auch mit nur einer Schnittstelle gehen. 12th June 2009, 17:00-19:30 o'clock; Laura Attendees: Kristian, Manuel, Caro, Hannes, Sarah, Laura
 * passende Zielsequenz in der M13-KE-Sequenz (NewEnglandBiolabs)

Planning of the Fok-Expression vector: search for needed biobrick parts


 * high copy plasmid backbone with ampicillin resistance: pSB1A3


 * Tetracyclin Repressor and Tet repressible promoter: BBa_Q04400

complementary oligos) 15th June 2009, 10:00-12:00 o'clock; Laura Attendees: Manu, R&uuml;diger, Julia, Gerrit, Max, Christoph, Imran, Sarah, Isabell, Caro, Hannes, Laura
 * Ribosome binding site: BBa_B0030 (or synthesis by our own with two

iGEM Deutschland e.V.

concrete meaning of "Wegfall seiner steuerbeg&uuml;nstigten Zwecke"
 * editing of the articles of iGEM Deutschland e.V. - Caro: ask for the

- Julia: will already start the registration at the Registergericht

Sponsoring

have read it, it will be transmitted to the companys
 * telephone call with Timo: letter is written; as soon as Kristian will

Labtalk

Julia, R&uuml;diger), Agos (Christoph), Software (Caro will ask in email, also if they could help with the website)
 * distribution of the talks: iGEM in general (Manu), Fok (Hannes,

Argonauts

new e. coli expressionvector and search for oligosequences that can be cut by agos FOK/ Expressionvector
 * Christoph: post the sequences of GATC in the labjournal, ask for a

biobrick parts together 15th June 2009, 17:00-18:30 o'clock; Julia I set up the competent BL21 de3 Gold cells with tetracyclin and another sample with BL21 gold (no de3)and put them into the 37&deg; C room over night.
 * as soon as Kristian will give his agreement we can start cloning the

16th June 2009, 09:30-13:00 o'clock; Hannes,Gerrit, Sarah Group: AGO

Attendees: Gerrit, Sarah, Hannes

cells from NOVAGEN don't have tet resistance.
 * BL21 de3 cells from yesterday didn't grow in LB+tet, because the BL21

competent BL21 de3 cells.
 * Somebody from the Fuchs lab was so generous to give us an Eppi with

BL21 de3 (1 plate BL21 de3 + Aa, 1 plate BL21 de3 + Tt, 1 control plate BL21 de3) and let them grow over night at 37&deg;C on LB+kan plates
 * We did a new transformation with the Aa and the Tt plasmid into

lab have tetracycline resistance (2ml Lb+tet inoculated with 1&micro;l BL21 de3 --&gt; 37&deg;C over night)
 * We made a control to check whether the cells we got from Fuchs


 * We also made about 15 new LB+Kan plates.

17th June 2009, 18:00-19:00 o'clock; Hannes


 * Inoculation of 10ml LB (+kan) with:

1. RV308 + Aa (+kan)

2. RV308 + Tt (+kan)

3. RV308 control (no kan added)

4. BL21 + Aa (+kan)

5. BL21 + Tt (+kan)

-&gt; grow at 37&deg;C over night in shaker -&gt; test of protein expression tomorrow

tomorrow
 * Inoculation of 15ml LB with BL21 de3 -&gt; make competent cells

resistance was negative -&gt; no tet resistance
 * Test whether the BL21 de3 cells from the Fuchs lab have tet

18th June 2009, 13:00-17:00 o'clock; Laura Planning of new expression vector

pASK (IBA), pQE (Qiagen), pMal (NEB), pGEX (GE) -&gt;appropriate vector: pMAL-p5X with lacO/P, lacIq, Amp, no igem restriction sites in backbone, size: 5752bp
 * search for standard expression vector in vectorbases: pET (Novagen),

-&gt;sequence: CCGACACCATCGAATGGTGCAAAACCTTTCGCGGTATGGCATGATAGCGCCCGGAAGAGAGTCAATTCAGGGTGGTGAAT GTGAAACCAGTAACGTTATACGATGTCGCAGAGTATGCCGGTGTCTCTTATCAGACCGTTTCCCGCGTGGTGAACCAGGC CAGCCACGTTTCTGCGAAAACGCGGGAAAAAGTGGAAGCGGCGATGGCGGAGCTGAATTACATTCCCAACCGCGTGGCAC AACAACTGGCGGGCAAACAGTCGTTGCTGATTGGCGTTGCCACCTCCAGTCTGGCCCTGCACGCGCCGTCGCAAATTGTC GCGGCGATTAAATCTCGCGCCGATCAACTGGGTGCCAGCGTGGTGGTGTCGATGGTAGAACGAAGCGGCGTCGAAGCCTG TAAAGCGGCGGTGCACAATCTTCTCGCGCAACGCGTCAGTGGGCTGATCATTAACTATCCGCTGGATGACCAGGATGCCA TTGCTGTGGAAGCTGCCTGCACTAATGTTCCGGCGTTATTTCTTGATGTCTCTGACCAGACACCCATCAACAGTATTATT TTCTCCCATGAAGACGGTACGCGACTGGGCGTGGAGCATCTGGTCGCATTGGGTCACCAGCAAATCGCGCTGTTAGCGGG CCCATTAAGTTCTGTCTCGGCGCGTCTGCGTCTGGCTGGCTGGCATAAATATCTCACTCGCAATCAAATTCAGCCGATAG CGGAACGGGAAGGCGACTGGAGTGCCATGTCCGGTTTTCAACAAACCATGCAAATGCTGAATGAGGGCATCGTTCCCACT GCGATGCTGGTTGCCAACGATCAGATGGCGCTGGGCGCAATGCGCGCCATTACCGAGTCCGGGCTGCGCGTTGGTGCGGA TATTTCGGTAGTGGGATACGACGATACCGAAGACAGCTCATGTTATATCCCGCCGTTAACCACCATCAAACAGGATTTTC GCCTGCTGGGGCAAACCAGCGTGGACCGCTTGCTGCAACTCTCTCAGGGCCAGGCGGTGAAGGGCAATCAGCTGTTGCCC GTCTCACTGGTGAAAAGAAAAACCACCCTGGCGCCCAATACGCAAACCGCCTCTCCCCGCGCGTTGGCCGATTCATTAAT GCAGCTGGCACGACAGGTTTCCCGACTGGAAAGCGGGCAGTGAGCGCAACGCAATTAATGTAAGTTAGCTCACTCATTAG GCACAATTCTCATGTTTGACAGCTTATCATCGACTGCACGGTGCACCAATGCTTCTGGCGTCAGGCAGCCATCGGAAGCT GTGGTATGGCTGTGCAGGTCGTAAATCACTGCATAATTCGTGTCGCTCAAGGCGCACTCCCGTTCTGGATAATGTTTTTT GCGCCGACATCATAACGGTTCTGGCAAATATTCTGAAATGAGCTGTTGACAATTAATCATCGGCTCGTATAATGTGTGGA ATTGTGAGCGGATAACAATTTCACACAGGAAACAGCCAGTCCGTTTAGGTGTTTTCACGAGCAATTGACCAACAAGGACC ATAGATTATGAAAATAAAAACAGGTGCACGCATCCTCGCATTATCCGCATTAACGACGATGATGTTTTCCGCCTCGGCTC TCGCCAAAATCGAAGAAGGTAAACTGGTAATCTGGATTAACGGCGATAAAGGCTATAACGGTCTCGCTGAAGTCGGTAAG AAATTCGAGAAAGATACCGGAATTAAAGTCACCGTTGAGCATCCGGATAAACTGGAAGAGAAATTCCCACAGGTTGCGGC AACTGGCGATGGCCCTGACATTATCTTCTGGGCACACGACCGCTTTGGTGGCTACGCTCAATCTGGCCTGTTGGCTGAAA TCACCCCGGACAAAGCGTTCCAGGACAAGCTGTATCCGTTTACCTGGGATGCCGTACGTTACAACGGCAAGCTGATTGCT TACCCGATCGCTGTTGAAGCGTTATCGCTGATTTATAACAAAGATCTGCTGCCGAACCCGCCAAAAACCTGGGAAGAGAT CCCGGCGCTGGATAAAGAACTGAAAGCGAAAGGTAAGAGCGCGCTGATGTTCAACCTGCAAGAACCGTACTTCACCTGGC CGCTGATTGCTGCTGACGGGGGTTATGCGTTCAAGTATGAAAACGGCAAGTACGACATTAAAGACGTGGGCGTGGATAAC GCTGGCGCGAAAGCGGGTCTGACCTTCCTGGTTGACCTGATTAAAAACAAACACATGAATGCAGACACCGATTACTCCAT CGCAGAAGCTGCCTTTAATAAAGGCGAAACAGCGATGACCATCAACGGCCCGTGGGCATGGTCCAACATCGACACCAGCA AAGTGAATTATGGTGTAACGGTACTGCCGACCTTCAAGGGTCAACCATCCAAACCGTTCGTTGGCGTGCTGAGCGCAGGT ATTAACGCCGCCAGTCCGAACAAAGAGCTGGCAAAAGAGTTCCTCGAAAACTATCTGCTGACTGATGAAGGTCTGGAAGC GGTTAATAAAGACAAACCGCTGGGTGCCGTAGCGCTGAAGTCTTACGAGGAAGAGTTGGTGAAAGATCCGCGTATTGCCG CCACTATGGAAAACGCCCAGAAAGGTGAAATCATGCCGAACATCCCGCAGATGTCCGCTTTCTGGTATGCCGTGCGTACT GCGGTGATCAACGCCGCCAGCGGTCGTCAGACTGTCGATGAAGCCCTGAAAGACGCGCAGACTAATTCGAGCTCGAACAA CAACAACAATAACAATAACAACAACCTCGGGATCGAGGGAAGGATTTCACATATGTCCATGGGCGGCCGCGATATCGTCG ACGGATCCGAATTCCCTGCAGGTAATTAAATAAGCTTCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTT TTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGG CCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCT TTTTGCGTTTCTACAAACTCTTTCGGTCCGTTGTTTATTTTTCTAAATACATTCAAATATGTATCCGCTCATGAGACAAT AACCCTGATAAATGCTTCAATAATATTGAAAAAGGAAGAGTATGAGTATTCAACATTTCCGTGTCGCCCTTATTCCCTTT TTTGCGGCATTTTGCCTTCCTGTTTTTGCTCACCCAGAAACGCTGGTGAAAGTAAAAGATGCTGAAGATCAGTTGGGTGC ACGAGTGGGTTACATCGAACTGGATCTCAACAGCGGTAAGATCCTTGAGAGTTTTCGCCCCGAAGAACGTTTCCCAATGA TGAGCACTTTTAAAGTTCTGCTATGTGGCGCGGTATTATCCCGTGTTGACGCCGGGCAAGAGCAACTCGGTCGCCACATA CACTATTCTCAGAATGACTTGGTTGAGTACTCACCAGTCACAGAAAAGCATCTTACGGATGGCATGACAGTAAGAGAATT ATGCAGTGCTGCCATAACCATGAGTGATAACACTGCGGCCAACTTACTTCTGACAACGATCGGAGGACCGAAGGAGCTAA CCGCTTTTTTGCACAACATGGGGGATCATGTAACTCGCCTTGATCGTTGGGAACCGGAGCTGAATGAAGCCATACCAAAC GACGAGCGTGACACCACGATGCCTGTAGCAATGGCAACAACGTTGCGCAAACTATTAACTGGCGAACTACTTACTCTAGC TTCCCGGCAACAATTAATAGACTGGATGGAGGCGGATAAAGTTGCAGGACCACTTCTGCGCTCGGCCCTTCCGGCTGGCT GGTTTATTGCTGATAAATCTGGAGCCGGTGAGCGTGGGTCTCGCGGTATCATTGCAGCACTGGGGCCAGATGGTAAGCCC TCCCGTATCGTAGTTATCTACACGACGGGGAGTCAGGCAACTATGGATGAACGAAATAGACAGATCGCTGAGATAGGTGC CTCACTGATTAAGCATTGGTAACTGTCAGACCAAGTTTACTCATATATACTTTAGATTGATTTCCTTAGGACTGAGCGTC AACCCCGTAGAAAAGATCAAAGGATCTTCTTGAGATCCTTTTTTTCTGCGCGTAATCTGCTGCTTGCAAACAAAAAAACC ACCGCTACCAGCGGTGGTTTGTTTGCCGGATCAAGAGCTACCAACTCTTTTTCCGAAGGTAACTGGCTTCAGCAGAGCGC AGATACCAAATACTGTCCTTCTAGTGTAGCCGTAGTTAGGCCACCACTTCAAGAACTCTGTAGCACCGCCTACATACCTC GCTCTGCTAATCCTGTTACCAGTGGCTGCTGCCAGTGGCGATAAGTCGTGTCTTACCGGGTTGGACTCAAGACGATAGTT ACCGGATAAGGCGCAGCGGTCGGGCTGAACGGGGGGTTCGTGCACACAGCCCAGCTTGGAGCGAACGACCTACACCGAAC TGAGATACCTACAGCGTGAGCTATGAGAAAGCGCCACGCTTCCCGAAGGGAGAAAGGCGGACAGGTATCCGGTAAGCGGC AGGGTCGGAACAGGAGAGCGCACGAGGGAGCTTCCAGGGGGAAACGCCTGGTATCTTTATAGTCCTGTCGGGTTTCGCCA CCTCTGACTTGAGCGTCGATTTTTGTGATGCTCGTCAGGGGGGCGGAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTT TACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTTCTTTCCTGCGTTATCCCCTGATTCTGTGGATAACCGTATT ACCGCCTTTGAGTGAGCTGATACCGCTCGCCGCAGCCGAACGACCGAGCGCAGCGAGTCAGTGAGCGAGGAAGCGGAAGA GCGCCTGATGCGGTATTTTCTCCTTACGCATCTGTGCGGTATTTCACACCGCATATAAGGTGCACTGTGACTGGGTCATG GCTGCGCCCCGACACCCGCCAACACCCGCTGACGCGCCCTGACGGGCTTGTCTGCTCCCGGCATCCGCTTACAGACAAGC TGTGACCGTCTCCGGGAGCTGCATGTGTCAGAGGTTTTCACCGTCATCACCGAAACGCGCGAGGCAGCTGCGGTAAAGCT CATCAGCGTGGTCGTGCAGCGATTCACAGATGTCTGCCTGTTCATCCGCGTCCAGCTCGTTGAGTTTCTCCAGAAGCGTT AATGTCTGGCTTCTGATAAAGCGGGCCATGTTAAGGGCGGTTTTTTCCTGTTTGGTCACTGATGCCTCCGTGTAAGGGGG ATTTCTGTTCATGGGGGTAATGATACCGATGAAACGAGAGAGGATGCTCACGATACGGGTTACTGATGATGAACATGCCC GGTTACTGGAACGTTGTGAGGGTAAACAACTGGCGGTATGGATGCGGCGGGACCAGAGAAAAATCACTCAGGGTCAATGC CAGCGCTTCGTTAATACAGATGTAGGTGTTCCACAGGGTAGCCAGCAGCATCCTGCGATGCAGATCCGGAACATAATGGT GCAGGGCGCTGACTTCCGCGTTTCCAGACTTTACGAAACACGGAAACCGAAGACCATTCATGTTGTTGCTCAGGTCGCAG ACGTTTTGCAGCAGCAGTCGCTTCACGTTCGCTCGCGTATCGGTGATTCATTCTGCTAACCAGTAAGGCAACCCCGCCAG CCTAGCCGGGTCCTCAACGACAGGAGCACGATCATGCGCACCCGTGGCCAGGACCCAACGCTGCCCGAAATT

to Freigem restriction sites: -&gt;primer will be designed and ordered tomorrow to get the right construct out of the lab vector no 258
 * planning of replacing MalE-gene by chloramphenicol construct adjacent

18th June 2009, 11:00-16:00 o'clock; Hannes Attendees: Sascha, Hannes, Christoph Protein expression of AGO (Tt and Aa) with transformed BL21 de3 and RV308

We took samples after 1,2 and 4 hours after induction with 1mM IPTG

Samples were frozen at -20&deg;C over night to run the SDS gel the next day.

19th June 2009, 16:00-20:00 o'clock; Laura &amp; Caro Attendees: Caro, Laura, Kristian

Further planning of the primer for ab vector no 258 and looking up Shine Dalgarno sequences in literature

19th June 2009, 10:00-16:00 o'clock; Hannes Attendees: Hannes, Sascha

- We made aobut 7 SDS gels with HOEFER mighty small system.

- SDS-page with samples from yesterday. (picture from Sascha)

22th June 2009, 10:00-13:00, 16:00-17:00 o'clock; Laura &amp; Caro Design of primers:


 * forward primer:

GATCG (randomly chosen nucleotides to enable restriction by MfeI)-MfeI restriction site-following nucleotides of pMAL-p5x including shine dalgarno (AGGA) (position 1508-1518)-GAAA-XbaI restriction site-TG-NgoMIV-first 23 nucleotides of CAT gene (position in vector 258: 2721-2744)

<img class="art-article" src="http://2009.igem.org/wiki/images/8/86/Freiburg09_Primerforward.JPG" name="Primerforward" height="73" width="527" />

in vector 258)-freigem restriction sites (AgeI, SpeI, NotI, PstI)-HindIII restriction site-CCCAT (randomly chosen nucleotides to enable restriction by HindIII)
 * reverse primer: last nucleotides of CAT gene (position 3358-3374

Order of vector pMAL-p5x and strain T7 Express Iq Competent E. coli at NEB (#C3016). 24 th June 2009, 12.30-13:00 o'clock;Caro Order of primers (Sigma)

primer:GATCGCAATTGACCAACAAGGAGAAATCTAGATGGCCGGCGAGAAAAAAATCACTGGATATACC
 * forward

primer:TACCCAAGCTTCTGCAGGCGGCCGCTACTAGTATTAACCGGTCGCCCCGCCCTGCCAC Sequences will be added
 * reverse

25 th June 2009, 17-18 o'clock;Caro Attendees:Manu, Laura, Kristian, Hannes, Anika, Timo, Gerrit, and others

Freigem Tatlk main topics:


 * work-plan of summer


 * Everybody should indicate his dates in an online calander

o&acute;clock in the lab 26th June 2009, 10:00-16:00 Hannes Attendees: Gerrit, Manuel, Hannes
 * Every week a Lab Talk is now fixed every friday at 10

- Transformation of Aa and Tt into BL21 gold de3 and T7 Express Iq
 * 1) C3016 -&gt; plate out on LB+Kan, 37&deg;C over night.

- Transformation of FokI inactive and active into XL1 blue -&gt; plate out on LB+Amp, 37&deg;C over night.

- We also made about 10 LB+amp plates

- primer arrived (Prfwd_CAT_iGEMRS;Prrev_CAT_iGEMRS) -&gt; -20&deg;C - Transformation of pMAL-p5x-Vektor into XL1 blue -&gt; plate out on LB+Amp, 37&deg;C over night.

DALI structure alignment with FokI 568 100 MOLECULE: PROTEIN (FOKI RESTRICTION ENDONUCLEAS); 2: 2fok-A 32.0 0.6 193 558 100 MOLECULE: FOKI RESTRICTION ENDONUCLEASE; 3: 2fok-B 27.3 0.6 193 560 100 MOLECULE: FOKI RESTRICTION ENDONUCLEASE; 4: 2p14-A 12.5 2.8 143 186 10 MOLECULE: HETERODIMERIC RESTRICTION ENDONUCLEASE R.BSPD6I 26.06.09, 9:00-17:30 Manuel, Isabell,Sarah, Laura
 * 1) Query: mol1A
 * No: Chain Z rmsd lali nres %id PDB Description 1: 1fok-A 38.7 0.0 193

-&gt; no bands on analytical agarose gel -&gt; PCR repeated with right concentration (Sven will put them in the -20&deg;C freezer)
 * PCR with labvector 258 and CAT primer, wrong buffer concentration

in XL1 blue, Ago Aa in BL21 gold de3, Ago Tt and Aa in T7 Express Iq -&gt; put them in 37&deg;C room
 * Inoculation of pMAL vector in XL1 blue, inactive and active FOK

Polymerase and buffer, 100 bp DNA ladder, 1 kb DNA ladder and loading dye (all in the freezer except loading dye, which is stored at the bench) 30.06.09, 9:00-18:30 Manuel, Hannes, Julia, Caro
 * we now have our own Taq Polymerase and buffer, Phusion

Buffer concentration-&gt; didnt work.
 * PCR with labvector 258 and CAT primer repeated with changed PCR-


 * Repeated with DMSO -&gt; also didnt work!

vector-&gt; -20&deg; C
 * AGO: Plasmidprep of FOKI active, FOKI unactive and pMAL

2 and 4 hours-&gt; SDS- page-&gt; Coomassie staining, destain over night
 * Protein Expression of T7+Aa, T7+Tt and BL21+Aa, samples after 1,


 * Inoculation of 100ml LB+Kan with T7+Aa and T7+Tt

contact: <a href="mailto:freigem09@googlemail.com">freigem09@googlemail.com</a>