Team:Aberdeen Scotland/modeling/downloads

Most of our programing was written in C, to plot our results we used GNUPlot

= C Programs =

Internal Dynamics
Deterministic Model GNUPlot file for deterministic mRNA parts GNUPlot file for deterministic Lysis parts GNUPlot file for deterministic Quorum Sensing parts Stochastic Model GNUPlot file for stochastic mRNA parts GNUPlot file for stochastic Lysis parts GNUPlot file for stochastic Quorum Sensing parts</a>

Monte Carlo
Stochastic Monte Carlo with Plotting</a> GNUPlot file to plot mRNA concentrations over time</a> GNUPlot file to plot protein concentrations over time</a> GNUPlot file to plot important protein concentrations over time</a>

Parameter Analysis
Stochastic 2D parameter analysis</a> GNUPlot file to plot 2D parameter analysis</a>

Chemotaxis
Chemotaxis for a population of bacteria</a>

Combined Model
Combined model of chemotaxis, lysis and glue deposition</a>

= Matlab Code =

Chemotaxis
Chemotaxis in 2D</a> Chemotaxis in 3D</a>

Internal Dynamics
SimBiology Model</a>

Quroum Sensing
Activation Point in a Spherical Microlitre of Bacteria</a> = iGEM Game! = We made a fun filled game, where you can play as the Pico Plumber itself. Download it here!!!</a>