Team:Lethbridge/Project





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Home

<ul> <li>Project Overview</a></li> <li>Our Sponsors</a></li> </ul></li>

<li>Team</a></li> <li>Project</a>

<ul> <li>Project Details</a></li> <li>Experiments</a></li> <li>Results</a></li> </ul></li>

<li>Ethics and Safety</a>

<ul> <li>Ethics and Synbio</a></li> <li>The Survey</a></li> <li>Safety</a></li> </ul></li>

<li>Notebook</a>

<ul> <li>Calendar</a></li> <li>May</a></li> <li>June</a></li> <li>July</a></li> <li><a href="http://2009.igem.org/Team:Lethbridge/Notebook#August">August</a></li> <li><a href="http://2009.igem.org/Team:Lethbridge/Notebook#September">September</a></li> <li><a href="http://2009.igem.org/Team:Lethbridge/Notebook#October">October</a></li> </ul></li>

<li><a class="qmparent" href="http://2009.igem.org/Team:Lethbridge/Team_Meetings" style="width:10px;">Meetings</a>

<ul> <li><a href="http://2009.igem.org/Team:Lethbridge/Team_Meetings#April">April</a></li> <li><a href="http://2009.igem.org/Team:Lethbridge/Team_Meetings#May">May</a></li> <li><a href="http://2009.igem.org/Team:Lethbridge/Team_Meetings#June">June</a></li> <li><a href="http://2009.igem.org/Team:Lethbridge/Team_Meetings#July">July</a></li> <li><a href="http://2009.igem.org/Team:Lethbridge/Team_Meetings#August">August</a></li> <li><a href="http://2009.igem.org/Team:Lethbridge/Team_Meetings#September">September</a></li> <li><a href="http://2009.igem.org/Team:Lethbridge/Team_Meetings#October">October</a></li> <li><a href="http://2009.igem.org/Team:Lethbridge/Team_Meetings#Events">Events</a></li> </ul></li>

<li><a href="http://2009.igem.org/Team:Lethbridge/Modeling" style="width:10px;">Modeling</a></li> <li><a class="qmparent" href="http://2009.igem.org/Team:Lethbridge/Parts" style="width:10px;">Parts</a>

<ul> <li><a href="http://2009.igem.org/Team:Lethbridge/Parts#Favourites">Favourites</a></li> <li><a href="http://2009.igem.org/Team:Lethbridge/Parts#Individual_Parts">Individual Parts</a></li> <li><a href="http://2009.igem.org/Team:Lethbridge/Parts#Constructs.2FDevices">Constructs</a></li> <li><a href="http://2009.igem.org/Team:Lethbridge/Parts#Intermediate_Parts">Intermediates</a></li> </ul></li>

<li><a href="http://2009.igem.org/Team:Lethbridge/Collaboration" style="width:25px;">Collaboration</a></li> <li><a href="http://2009.igem.org/Team:Lethbridge/Criteria" style="width:1px;">Judging</a></li> <li><a href="http://2009.igem.org/Team:Lethbridge/videos" style="width:117px;">Extra Information on SynBio</a></li> </li></ul>

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Project Details
Many of the metabolic processes in eukaryotic cells are localized to various subcellular compartments. For example, transcription of mRNA from DNA is localized in the nucleus; post-translational modification and folding of proteins occurs in the endoplasmic reticulum (Voet et al., 2004). This essentially segregates and regulates these processes. However, bacteria lack distinct organelles, and as such, many metabolic processes intermingle. Engineering an artificial organelle, capable of containing metabolic proteins, in bacteria would thus represent a fundamental advance in biotechnology. Towards this end, the University of Lethbridge iGEM team is working towards producing microcompartments from the lumazine synthase gene, which forms 60 subunit icosahedral capsids (Seebeck et al., 2006).

By generating a highly negative interior to the microcompartment, we hope to be able to target fluorescent proteins tagged with positively charged termini to the interior of the microcompartment (Figure 1). Utilizing fluorescence resonance energy transfer (FRET) between cyan and yellow fluorescent proteins, we will demonstrate the co-localization of these two proteins into the microcompartment.



For the future application of this technology we are working towards the targeting of proteins from the photosynthetic pathway into the microcompartment to optimize a biological photosynthetic fuel cell. The segregation of proteins and metabolites increases the efficiency of cellular processes and following this theme, we are working towards creating uniform nanoparticles Through the segregation of Mms6 protein within Escherichia coli (Figure 2). (Prozorov et al., 2007).

We have also created a novel tool, the N and C terminus phusion vectors (BBa_K249004 and BBa_K249005) which will allow the targeting of any protein into the lumazine microcompartment. These vectors are an important highlight of the team's project, as they create a straightforward method for introducing the positively charged arginine tail onto any protein using standard biobrick assembly methods.

References

Prozorov, T., Mallapragada, S. K., Narasimhan, B., Wang, L., Palo, P., Nilsen-Hamilton, M., Williams, T. J., Bazylinski, D. A., Prozorov, R., and Canfield, P. C. (2007). Protein-mediated synthesis of uniform superparamagnetic magnetite nanocrystals. Adv. Funct. Mater. Advanced Functional Materials. 17, 951-957

Seebeck, F. P., Woycechowsky, K. J., Zhuang, W., Rabe, J. P., and Hilvert, D., (2006). A simple tagging system for protein encapulation. J. Am. Chem. Soc. 128, 4516-4517

Voet, D., and Voet, J.G., (2004). Biochemistry 3rd Edition. John Wiley & Sons, Inc.

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Gene expression
The expression of a particular gene can be detected by measuring the amount of the protein product at different time points. The gene must be controlled in some sort of regulatory manner for expression to be calculable. The gene must be transformed into an expression cell strain, typically BL21 for E. coli. The cells are grown to an OD of 0.6. At this point the regulatory chemical is added to induce or repress the protein’s expression. Samples of the culture are taken at different time points. The cells are opened up and the contents are examined via some visualization technique, typically SDS-PAGE. We intend to view the expression of the following constructs in this manner.
 * pLacI:sRBS:mms6:dT	(induced with IPTG)
 * pLacI:sRBS:Lumazine Synthase:dT (induced with IPTG)
 * pStrong:Riboswitch:cheZ:dT (induced with Theophylline)
 * pStrong:Riboswitch:GFP:dT (induced with Theophylline)
 * pBAD:RBS:TetR:dT:pTetR:mRBS:N-EYFP:dT	(repressed with Arabinose)
 * pBAD:RBS:TetR:dT:pTetR:mRBS:C-EYFP:dT	(repressed with Arabinose)
 * pBAD:RBS:TetR:dT:pTetR:mRBS:N-ECFP:dT	(repressed with Arabinose)
 * pBAD:RBS:TetR:dT:pTetR:mRBS:C-ECFP:dT	(repressed with Arabinose)

For the repressible constructs, as the repression of a protein is far more difficult to detect than the overexpression of a protein we intend to use fluorescence as our measurable, since in each case the protein which is repressed is a fluorescent protein. This is done in the same manner, as the expression, with samples of the culture being taken at different time points. Since we are unsure whether the intrinsic fluorescence of the cell will interfere with our measurements, we will measure the fluorescence of samples where the cells have been opened, as well as samples where they have not been opened (taken from the same culture, at the same time point). By measuring the change in fluorescence of the cells (or cell lysate) we can measure the effect of repression on the gene.

Motility Assay
The pStrong:Riboswitch:cheZ:dT construct is designed as a regulated motility construct. This gene has been designed to introduce regulated motility, to our motility knockout strain of E. coli, RP1616. In order to determine the mobility of our bacteria, we will qualitatively measure the apparent mobility of our bug in the absence and the presence of different concentrations of theophylline. We intend to do this in several different ways.

The first of which is simply a motility test. We will stab some of our bacteria into a motility media, in order to determine whether or not our bacteria are motile. A control of regular DH5a cells will be used as well.

The second is to plate the RP1616 cells with the motility construct on Plates containing different concentrations of theophylline. The cells which are plated where no theophylline is present are not expected to migrate from their original placement; Cells plated on relatively low concentrations (0.1 µM theophylline) are expected to migrate only slightly; and cells plated at moderate concentrations of theophylline (1 µM) are expected to migrate a fair distance; cells which are plated at concentration above the threshold for survival (1.5 – 2.0 µM) are not expected to survive.

The third method for determining relative motility is to view the movement of the cells via a microscope. Control cells (DH5a) are expected to have superb motility; RP1616 cells transformed with the motility construct are expected to behave differently at different concentrations of theophylline. Cells where no theophylline is present are expected to experience on a tumbling-like motion. Cells where low concentrations of theophylline are present are expected to mostly tumble, but some running is expected. Cells which are present under moderate concentrations of theophylline are expected to exhibit mostly a running motion. Cells which are present at theophylline concentrations above the threshold for survival are not expected to exhibit any motility whatsoever.

Electron microscopy
The Magnetite nanoparticle producing construct, pLacI:sRBS:mms6:dT, is expected to produce uniform nanoparticles. In order to visualize the size and shape of the nanoparticles we intend to use electron microscopy. With the aid of the electron microscope it is possible to visualize particles on the nanoscale. For this we will need to overexpress the protein (see gene expression) with IPTG. The magnetite, Fe3O4, nanoparticles form in the presence of FeCl2. Varying concentrations of FeCl2 will be added to the cells. After 24 hours, the cells will be opened up using chemical, mechanical and chemical/mechanical techniques, in order to determine if this poses any significant difference on the nanoparticles themselves. The nanoparticles are insoluble, and therefore can be filtered off from the cell lysate and washed. There are different types of filters which can be used to collect nanoparticles, we will use thin polycarbonate membrane as our filter of choice since the nanoparticles which we expect to obtain are on the smaller scale (6-20 nm in diameter). We will then place the sample under the electron microscope to visualize our magnetite nanoparticles.

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Fluorescence
Fluorescence will be used to determine the localization of a single fluorescent protein within our microcompartments. In order to do this, we will have to overexpress our Lumazine microcompartments using IPTG. Since we are not sure if the microcompartments from around our proteins, or if the proteins are targeted into the microcompartments we will perform the experiment in two different ways. The cells will then be visualized in the fluorimeter. In order to determine if the fluorescent proteins are localized with the microcompartments, it may be useful to visualize the cells with the aid of a confocal microscope. This will allow us to determine if the fluorescence is localized to specific points with the cells.
 * 1) The lumazine synthase will be induced and the microcompartments will be allowed to form while the expression of the fluorescent protein (either YFP or CFP) is repressed using the Tetracycline inverter, which we have chosen to induce with the pBAD promoter (controlled by the presence of Arabinose). An arabinose pulse is added to repress the expression of the fluorescent protein, after some time, the arabinose will be used up and natural expression of the fluorescent protein will occur.
 * 2) The lumazine synthase will be induced and the microcompartments will be allowed to form while expression of the fluorescent protein is allowed to take place. No arabinose is added.

FRET
Fluorescence Resonance Energy Transfer, FRET will be used to determine the colocalization of two fluorescent proteins within the microcompartment. Yellow Fluorescent Protein (YFP) and Cyan Fluorescent Protein (CFP) are FRET pairs and are thus perfect for this application. The way that FRET works is that a donor molecule, in this case CFP, is excited by the application of an initial wavelength. The excited CFP emits fluorescence energy at a wavelength similar to that at which the acceptor molecule, in this case YFP, is excited. The fluorescence energy is thus transferred from molecule to another at that resonance wavelength. The acceptor molecule then emits fluorescence energy of its own at a wavelength which is distinguishable from the rest of the excitation and emission wavelengths. The energy transfer is distance dependent. If the two molecules are close in proximity (1 – 10 nm) the energy is transferred efficiently. The further away the two molecules are, the less efficient the energy transfer, and finally if the two molecules are too far away (more than 10 nm apart) the energy will not be transferred at all. CFP is excited at 436 nm, and emits fluorescence energy at 480 nm. YFP is excited at 514 nm and emits fluorescence energy at 538 nm. If the two fluorescent proteins are colocalized within the microcompartment, then one would expect that efficient fluorescence energy transfer would occur. If the two proteins are not colocalized, then one would expect not to see any fluorescent energy transfer. In order to show fluorescence energy transfer, the intrinsic fluorescence of the cell will be used as a background, and the fluorescence of CFP alone in the cell will be compared to the fluorescence of CFP alone inside the microcompartment.

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RiPS measurements
In a similar way, fluorescence can be used to assess the theophylline riboswitch and rpsA TIR efficiencies, by generating values for the Ribosome initiation per second (or RiPS). Both the riboswitch and TIR act as alternative Ribosomal Binding Sites (RBS), by using GFP as the expression portion of these constructs it is possible to provide a calculation for the RiPS of these two parts. The parts are inserted in a RiPS generating plasmid (GFP producing plasmid). The fluorescence of GFP can be quantitatively measured using a fluorimeter. The fluorescence of GFP is measured over time and the Rise time, and expression time of the fluorescence is measured. These values are imported into a modelling program and the value for RiPS is generated for each of these parts. In order to measure the RiPS for the theophylline riboswitch, GFP’s fluorescence must be measured under varying concentrations of theophylline (0.1 µM, 0.25 µM, 0.5 µM, 0.75 µM, 1.0 µM, 1.25 µM, 1.5 µM and 2.0 µM). In order to measure the RiPS for the rspA TIR, GFP’s fluorescence must be measure under various stress conditions (i.e. Minimal media, heat, cold, various toxins, etc).
 * pStrong:Riboswitch:GFP:dT
 * pStrong:rpsA TIR:GFP:dT

Fluorescence
Two constructs (EYFP with either N- or C-terminal 10Arg (10R) tags) were characterized by the following procedure, either in the presence or absence of 0.4% w/v arabinose.

Briefly, 5 mL cultures (LB + 10 mg/mL ampicillin, with or without 0.4 % w/v arabinose) were inoculated with 1 mL of previously prepared culture of E. coli DH5α containing the EYFP constructs. After 1 hour growth at 37 °C (with shaking), 1 mL of the culture was harvested. Cells were centrifuged (13500 g, 5 min) and resuspended in 1 mL of either 8 M urea or buffer TAKM7 (50 mM Tris-Cl pH 7.5 at room temperature, 30 mM NH4Cl, 70 mM KCl, 7 mM MgCl2) containing 1 mg/mL lysozyme. Following a 10 min incubation at room temperature, cell debris was removed by centrifugation (13500 g, 5 min). The fluorescence of the resulting clear cell debris was determined using a Varian Cary Eclipse Fluorescence Spectrophotometer in quartz cuvettes, referenced with respect to the background fluorescence of either 8 M urea or buffer TAKM7. The fluorescence of EYFP was excited at 514 nm; the fluorescence emission was measured through 5 nm slits from 520 to 600 nm. The results are summarized below:





These results indicate that cells express either N- or C-terminal 10R tagged YFP, as shown by an increase in the fluorescence of cleared cell lysates. This fluorescence can be removed by treating cell lysates with 8 M urea, which would denature the protein, reducing the fluorescence of the lysate. This is demonstrated by a change of 10 fluorescence units between total cellular proteins under native conditions compared to denaturing conditions.

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<li><a href="http://2009.igem.org/Team:Lethbridge">Home</a></li> <li><a href="http://2009.igem.org/Team:Lethbridge/Project">Top of Page</a></li> </li></ul>

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Lumazine (K249002)
Score = 809 bits (1860),  Expect = 0.0

Identities = 465/465 (100%), Gaps = 0/465 (0%)

Strand=Plus/Plus

Query 112  ATGCAGATTTATGAAGGCAAACTGACCGCGGAAGGCCTGCGCTTTGGCATTGTGGCGAGC  171 Sbjct 1    ATGCAGATTTATGAAGGCAAACTGACCGCGGAAGGCCTGCGCTTTGGCATTGTGGCGAGC  60

Query 172  CGCTTTAACCATGCGCTGGTGGATCGCCTGGTGGAAGGCGCGATTGATTGCATTGTGCGC  231 Sbjct 61   CGCTTTAACCATGCGCTGGTGGATCGCCTGGTGGAAGGCGCGATTGATTGCATTGTGCGC  120

Query 232  CATGGTGGTCGCGAAGAAGATATTACCCTGGTGCGCGTGCCGGGCAGCTGGGAAATTCCG  291 Sbjct 121  CATGGTGGTCGCGAAGAAGATATTACCCTGGTGCGCGTGCCGGGCAGCTGGGAAATTCCG  180

Query 292  GTGGCGGCGGGCGAACTGGCGCGCAAAGAAGATATTGATGCGGTGATTGCGATTGGCGTG  351 Sbjct 181  GTGGCGGCGGGCGAACTGGCGCGCAAAGAAGATATTGATGCGGTGATTGCGATTGGCGTG  240

Query 352  CTGATTGAAGGCGCGGAACCGCATTTTGATTATATTGCGAGCGAAGTGAGCAAAGGCCTG  411 Sbjct 241  CTGATTGAAGGCGCGGAACCGCATTTTGATTATATTGCGAGCGAAGTGAGCAAAGGCCTG  300

Query 412  GCGAACCTGAGCCTGGAACTGCGCAAACCGATTACCTTTGGCGTGATTACCGCGGATGAA  471 Sbjct 301  GCGAACCTGAGCCTGGAACTGCGCAAACCGATTACCTTTGGCGTGATTACCGCGGATGAA  360

Query 472  CTGGAAGAAGCGATTGAACGCGCGGGCACCAAACATGGCAACAAAGGCTGGGAAGCGGCG  531 Sbjct 361  CTGGAAGAAGCGATTGAACGCGCGGGCACCAAACATGGCAACAAAGGCTGGGAAGCGGCG  420

Query 532  CTGAGCGCGATTGAAATGGCGAACCTGTTTAAAAGCCTGCGCTAG  576 Sbjct 421  CTGAGCGCGATTGAAATGGCGAACCTGTTTAAAAGCCTGCGCTAG  465

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Lumazine-dT (S042....)
>lcl|33723

Length=465

Score = 809 bits (1860),  Expect = 0.0

Identities = 465/465 (100%), Gaps = 0/465 (0%)

Strand=Plus/Plus

Query 108  ATGCAGATTTATGAAGGCAAACTGACCGCGGAAGGCCTGCGCTTTGGCATTGTGGCGAGC  167 Sbjct 1    ATGCAGATTTATGAAGGCAAACTGACCGCGGAAGGCCTGCGCTTTGGCATTGTGGCGAGC  60

Query 168  CGCTTTAACCATGCGCTGGTGGATCGCCTGGTGGAAGGCGCGATTGATTGCATTGTGCGC  227 Sbjct 61   CGCTTTAACCATGCGCTGGTGGATCGCCTGGTGGAAGGCGCGATTGATTGCATTGTGCGC  120

Query 228  CATGGTGGTCGCGAAGAAGATATTACCCTGGTGCGCGTGCCGGGCAGCTGGGAAATTCCG  287 Sbjct 121  CATGGTGGTCGCGAAGAAGATATTACCCTGGTGCGCGTGCCGGGCAGCTGGGAAATTCCG  180

Query 288  GTGGCGGCGGGCGAACTGGCGCGCAAAGAAGATATTGATGCGGTGATTGCGATTGGCGTG  347 Sbjct 181  GTGGCGGCGGGCGAACTGGCGCGCAAAGAAGATATTGATGCGGTGATTGCGATTGGCGTG  240

Query 348  CTGATTGAAGGCGCGGAACCGCATTTTGATTATATTGCGAGCGAAGTGAGCAAAGGCCTG  407 Sbjct 241  CTGATTGAAGGCGCGGAACCGCATTTTGATTATATTGCGAGCGAAGTGAGCAAAGGCCTG  300

Query 408  GCGAACCTGAGCCTGGAACTGCGCAAACCGATTACCTTTGGCGTGATTACCGCGGATGAA  467 Sbjct 301  GCGAACCTGAGCCTGGAACTGCGCAAACCGATTACCTTTGGCGTGATTACCGCGGATGAA  360

Query 468  CTGGAAGAAGCGATTGAACGCGCGGGCACCAAACATGGCAACAAAGGCTGGGAAGCGGCG  527 Sbjct 361  CTGGAAGAAGCGATTGAACGCGCGGGCACCAAACATGGCAACAAAGGCTGGGAAGCGGCG  420

Query 528  CTGAGCGCGATTGAAATGGCGAACCTGTTTAAAAGCCTGCGCTAG  572 Sbjct 421  CTGAGCGCGATTGAAATGGCGAACCTGTTTAAAAGCCTGCGCTAG  465

pBAD-TetR inverter
Score = 17.3 bits (36), Expect = 6.6

Identities = 509/509 (100%), Gaps = 0/509 (0%)

Strand=Plus/Minus

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<li><a href="http://2009.igem.org/Team:Lethbridge">Home</a></li> <li><a href="http://2009.igem.org/Team:Lethbridge/Project">Top of Page</a></li> </li></ul>

<script type="text/javascript">qm_create(0,false,0,500,false,false,false,false,false);

pTetT-EYFP
Score = 1247 bits (2868), Expect = 0.0

Identities = 717/717 (100%), Gaps = 0/717 (0%)

Strand=Plus/Plus

pSB-N-terminus
Score = 60.0 bits (30), Expect = 1e-15

Identities = 30/30 (100%), Gaps = 0/30 (0%)

Strand=Plus/Plus

Query 10

ATGCGCCGCCGCCGCCGCCGCCGCCGCCGC 39 Sbjct 1

ATGCGCCGCCGCCGCCGCCGCCGCCGCCGC 30

Score = 54.0 bits (27), Expect = 6e-14

Identities = 27/27 (100%), Gaps = 0/27 (0%)

Strand=Plus/Plus

Query 16

CGCCGCCGCCGCCGCCGCCGCCGCCGC 42 Sbjct 4

CGCCGCCGCCGCCGCCGCCGCCGCCGC 30

pSB - C-terminus
>lcl|20071

Length=30

Score = 60.0 bits (30), Expect = 1e-15

Identities = 30/30 (100%), Gaps = 0/30 (0%)

Strand=Plus/Plus

Query 12

CGCCGCCGCCGCCGCCGCCGCCGCCGCTAA 41 Sbjct 1

CGCCGCCGCCGCCGCCGCCGCCGCCGCTAA 30

<style type="text/css">

/*!!!!!!!!!!! QuickMenu Core CSS [Do Not Modify!] !!!!!!!!!!!!!*/ .qmmc .qmdivider{display:block;font-size:1px;border-width:0px;border-style:solid;position:relative;z-index:1;}.qmmc .qmdividery{float:left;width:0px;}.qmmc .qmtitle{display:block;cursor:default;white-space:nowrap;position:relative;z-index:1;}.qmclear {font-size:1px;height:0px;width:0px;clear:left;line-height:0px;display:block;float:none !important;}.qmmc {position:relative;zoom:1;z-index:10;}.qmmc a, .qmmc li {float:left;display:block;white-space:nowrap;position:relative;z-index:1;}.qmmc div a, .qmmc ul a, .qmmc ul li {float:none;}.qmsh div a {float:left;}.qmmc div{visibility:hidden;position:absolute;}.qmmc .qmcbox{cursor:default;display:block;position:relative;z-index:1;}.qmmc .qmcbox a{display:inline;}.qmmc .qmcbox div{float:none;position:static;visibility:inherit;left:auto;}.qmmc li {z-index:auto;}.qmmc ul {left:-10000px;position:absolute;z-index:10;}.qmmc, .qmmc ul {list-style:none;padding:0px;margin:0px;}.qmmc li a {float:none;}.qmmc li:hover>ul{left:auto;}#qm0 ul {top:100%;}#qm0 ul li:hover>ul{top:0px;left:100%;}

/*!!!!!!!!!!! QuickMenu Styles [Please Modify!] !!!!!!!!!!!*/

/* QuickMenu 0 */

/*"""""""" (MAIN) Container""""""""*/ #qm0 {			width:auto; background-color:transparent; }

/*"""""""" (MAIN) Items""""""""*/ #qm0 a		{ padding:5px 60px 3px 0px; margin:0px 5px 0px 0px; color:#FFD600; font-family:Arial; font-size:12px; text-decoration:none; font-weight:bold; border-width:0px 0px 8px 0px; border-style:solid; border-color:#FFD600; }

/*"""""""" (MAIN) Hover State""""""""*/ #qm0 a:hover {			color:#3C13AF; border-color:#FFAD00; }

/*"""""""" (MAIN) Hover State - (duplicated for pure CSS)""""""""*/ #qm0 li:hover>a {			color:#3C13AF; border-color:#FFAD00; }

/*"""""""" (MAIN) Parent Items""""""""*/ #qm0 .qmparent {			background-repeat:no-repeat; background-position:95% 50%; }

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/*"""""""" (SUB) Items""""""""*/ #qm0 div a, #qm0 ul a		{ padding:3px 5px 3px 5px; background-color:transparent; color:#230672; font-size:11px; font-weight:normal; border-width:0px; border-style:none; border-color:#230672; }

/*"""""""" (SUB) Hover State""""""""*/ #qm0 div a:hover {			background-color:#476DD5; color:#FFFFFF; text-decoration:none; }

/*"""""""" (SUB) Hover State - (duplicated for pure CSS)""""""""*/ #qm0 ul li:hover>a {			background-color:#476DD5; color:#FFFFFF; text-decoration:none; }

/*"""""""" (SUB) Parent Items""""""""*/ #qm0 div .qmparent, #qm0 ul .qmparent {			background-image:url(qmimages/arrow_0.gif); }

/*"""""""" (SUB) Active State""""""""*/ body #qm0 div .qmactive, body #qm0 div .qmactive:hover {			background-color:#476DD5; background-image:url(qmimages/arrow_1.gif); color:#FFFFFF; }

/*"""""""" Individual Titles""""""""*/ #qm0 .qmtitle {			margin:2px 5px 5px 5px; color:#222222; font-family:Arial; font-size:11px; font-weight:bold; }

/*"""""""" Individual Horizontal Dividers""""""""*/ #qm0 .qmdividerx {			border-top-width:1px; margin:4px 5px 4px 5px; border-color:#999999; }

/*"""""""" Custom Rule""""""""*/ ul#qm0 ul {			width:100%; }

/*"""""""" Custom Rule""""""""*/ ul#qm0 li:hover > a.qmparent {			background-image:url(qmimages/arrow_1.gif); }

<style type="text/css">.qmfv{visibility:visible !important;}.qmfh{visibility:hidden !important;} <script type="text/javascript">if (!window.qmad){qmad=new Object;qmad.binit="";qmad.bvis="";qmad.bhide="";}

<script type="text/JavaScript">

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<li><a href="http://2009.igem.org/Team:Lethbridge">Home</a></li> <li><a href="http://2009.igem.org/Team:Lethbridge/Project">Top of Page</a></li> </li></ul>

<script type="text/javascript">qm_create(0,false,0,500,false,false,false,false,false);

pBAD-TetR-CEYFP-dT
Score = 275 bits (143),  Expect = 1e-77

Identities = 143/143 (100%), Gaps = 0/143 (0%)

Strand=Plus/Plus

Query 139  TACTAGAGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTT  198 Sbjct 704  TACTAGAGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTT  763

Query 199  TATCTGTTGTTTGTCGGTGAACGCTCTCTACTAGAGTCACACTGGCTCACCTTCGGGTGG  258 Sbjct 764  TATCTGTTGTTTGTCGGTGAACGCTCTCTACTAGAGTCACACTGGCTCACCTTCGGGTGG  823

Query 259  GCCTTTCTGCGTTTATATACTAG  281 Sbjct 824  GCCTTTCTGCGTTTATATACTAG  846

pBAD-TetR-NEYFP-dT
Score = 41.1 bits (21), Expect = 5e-07

Identities = 21/21 (100%), Gaps = 0/21 (0%)

Strand=Plus/Minus

Query 197  CATCTAGTATTTCTCCTCTTT  217 Sbjct 21   CATCTAGTATTTCTCCTCTTT  1

C-terminal ECFP-dT
Score = 41.1 bits (21), Expect = 4e-07

Identities = 21/21 (100%), Gaps = 0/21 (0%)

Strand=Plus/Plus

Query 116  GGCATGGACGAGCTGTACAAG  136 Sbjct 697  GGCATGGACGAGCTGTACAAG  717

Score = 29.5 bits (15), Expect = 0.001

Identities = 15/15 (100%), Gaps = 0/15 (0%)

Strand=Plus/Plus

Query 147  GACGAGCTGTACAAG  161 Sbjct 703  GACGAGCTGTACAAG  717

<style type="text/css">

/*!!!!!!!!!!! QuickMenu Core CSS [Do Not Modify!] !!!!!!!!!!!!!*/ .qmmc .qmdivider{display:block;font-size:1px;border-width:0px;border-style:solid;position:relative;z-index:1;}.qmmc .qmdividery{float:left;width:0px;}.qmmc .qmtitle{display:block;cursor:default;white-space:nowrap;position:relative;z-index:1;}.qmclear {font-size:1px;height:0px;width:0px;clear:left;line-height:0px;display:block;float:none !important;}.qmmc {position:relative;zoom:1;z-index:10;}.qmmc a, .qmmc li {float:left;display:block;white-space:nowrap;position:relative;z-index:1;}.qmmc div a, .qmmc ul a, .qmmc ul li {float:none;}.qmsh div a {float:left;}.qmmc div{visibility:hidden;position:absolute;}.qmmc .qmcbox{cursor:default;display:block;position:relative;z-index:1;}.qmmc .qmcbox a{display:inline;}.qmmc .qmcbox div{float:none;position:static;visibility:inherit;left:auto;}.qmmc li {z-index:auto;}.qmmc ul {left:-10000px;position:absolute;z-index:10;}.qmmc, .qmmc ul {list-style:none;padding:0px;margin:0px;}.qmmc li a {float:none;}.qmmc li:hover>ul{left:auto;}#qm0 ul {top:100%;}#qm0 ul li:hover>ul{top:0px;left:100%;}

/*!!!!!!!!!!! QuickMenu Styles [Please Modify!] !!!!!!!!!!!*/

/* QuickMenu 0 */

/*"""""""" (MAIN) Container""""""""*/ #qm0 {			width:auto; background-color:transparent; }

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/*"""""""" (MAIN) Hover State""""""""*/ #qm0 a:hover {			color:#3C13AF; border-color:#FFAD00; }

/*"""""""" (MAIN) Hover State - (duplicated for pure CSS)""""""""*/ #qm0 li:hover>a {			color:#3C13AF; border-color:#FFAD00; }

/*"""""""" (MAIN) Parent Items""""""""*/ #qm0 .qmparent {			background-repeat:no-repeat; background-position:95% 50%; }

/*"""""""" (MAIN) Active State""""""""*/ body #qm0 .qmactive, body #qm0 .qmactive:hover {			color:#3C13AF; text-decoration:none; border-color:#FFAD00; }

/*"""""""" (SUB) Container""""""""*/ #qm0 div, #qm0 ul {			padding:10px 5px 10px 5px; background-color:#EEEEEE; border-width:1px; border-style:solid; border-color:#3C13AF; }

/*"""""""" (SUB) Items""""""""*/ #qm0 div a, #qm0 ul a		{ padding:3px 5px 3px 5px; background-color:transparent; color:#230672; font-size:11px; font-weight:normal; border-width:0px; border-style:none; border-color:#230672; }

/*"""""""" (SUB) Hover State""""""""*/ #qm0 div a:hover {			background-color:#476DD5; color:#FFFFFF; text-decoration:none; }

/*"""""""" (SUB) Hover State - (duplicated for pure CSS)""""""""*/ #qm0 ul li:hover>a {			background-color:#476DD5; color:#FFFFFF; text-decoration:none; }

/*"""""""" (SUB) Parent Items""""""""*/ #qm0 div .qmparent, #qm0 ul .qmparent {			background-image:url(qmimages/arrow_0.gif); }

/*"""""""" (SUB) Active State""""""""*/ body #qm0 div .qmactive, body #qm0 div .qmactive:hover {			background-color:#476DD5; background-image:url(qmimages/arrow_1.gif); color:#FFFFFF; }

/*"""""""" Individual Titles""""""""*/ #qm0 .qmtitle {			margin:2px 5px 5px 5px; color:#222222; font-family:Arial; font-size:11px; font-weight:bold; }

/*"""""""" Individual Horizontal Dividers""""""""*/ #qm0 .qmdividerx {			border-top-width:1px; margin:4px 5px 4px 5px; border-color:#999999; }

/*"""""""" Custom Rule""""""""*/ ul#qm0 ul {			width:100%; }

/*"""""""" Custom Rule""""""""*/ ul#qm0 li:hover > a.qmparent {			background-image:url(qmimages/arrow_1.gif); }

<style type="text/css">.qmfv{visibility:visible !important;}.qmfh{visibility:hidden !important;} <script type="text/javascript">if (!window.qmad){qmad=new Object;qmad.binit="";qmad.bvis="";qmad.bhide="";}

<script type="text/JavaScript">

/******* Menu 0 Add-On Settings *******/ var a = qmad.qm0 = new Object;

// Match Widths Add On		a.mwidths_active = true;

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C-terminal EYFP-dT
Score = 19.9 bits (10), Expect = 0.80

Identities = 10/10 (100%), Gaps = 0/10 (0%)

Strand=Plus/Plus

Query 659  GAAGTTCATC  668 Sbjct 135  GAAGTTCATC  144

Score = 18.0 bits (9), Expect = 3.0

Identities = 9/9 (100%), Gaps = 0/9 (0%)

Strand=Plus/Plus

Query 714  ACAGCCACA  722 Sbjct 440  ACAGCCACA  448

mRBS-N-terminal ECFP
Score = 335 bits (174),  Expect = 1e-95

Identities = 178/180 (98%), Gaps = 0/180 (0%)

Strand=Plus/Minus

Query 135  GGTGAGCAAGGGCACGGGCAGCTTGCCGGTGGTGCAGATGAACTTCAGGGTCAGCTTGCC  194 Sbjct 180  GGTGGGCCAGGGCACGGGCAGCTTGCCGGTGGTGCAGATGAACTTCAGGGTCAGCTTGCC  121

Query 195  GTAGGTGGCATCGCCCTCGCCCTCGCCGGACACGCTGAACTTGTGGCCGTTCACGTCGCC  254 Sbjct 120  GTAGGTGGCATCGCCCTCGCCCTCGCCGGACACGCTGAACTTGTGGCCGTTCACGTCGCC  61

Query 255  GTCCAGCTCGACCAGGATGGGCACCACCCCGGTGAACAGCTCCTCGCCCTTGCTCACCAT  314 Sbjct 60   GTCCAGCTCGACCAGGATGGGCACCACCCCGGTGAACAGCTCCTCGCCCTTGCTCACCAT  1

mRBS-N-terminal EYFP
Score = 1379 bits (717), Expect = 0.0

Identities = 717/717 (100%), Gaps = 0/717 (0%)

Strand=Plus/Plus

Query 147  ATGGTGAGCAAGGGCGAGGAGCTGTTCACCGGGGTGGTGCCCATCCTGGTCGAGCTGGAC  206 Sbjct 1    ATGGTGAGCAAGGGCGAGGAGCTGTTCACCGGGGTGGTGCCCATCCTGGTCGAGCTGGAC  60

Query 207  GGCGACGTAAACGGCCACAAGTTCAGCGTGTCCGGCGAGGGCGAGGGCGATGCCACCTAC  266 Sbjct 61   GGCGACGTAAACGGCCACAAGTTCAGCGTGTCCGGCGAGGGCGAGGGCGATGCCACCTAC  120

Query 267  GGCAAGCTGACCCTGAAGTTCATCTGCACCACCGGCAAGCTGCCCGTGCCCTGGCCCACC  326 Sbjct 121  GGCAAGCTGACCCTGAAGTTCATCTGCACCACCGGCAAGCTGCCCGTGCCCTGGCCCACC  180

Query 327  CTCGTGACCACCTTCGGCTACGGCCTGCAATGCTTCGCCCGCTACCCCGACCACATGAAG  386 Sbjct 181  CTCGTGACCACCTTCGGCTACGGCCTGCAATGCTTCGCCCGCTACCCCGACCACATGAAG  240

Query 387  CTGCACGACTTCTTCAAGTCCGCCATGCCCGAAGGCTACGTCCAGGAGCGCACCATCTTC  446 Sbjct 241  CTGCACGACTTCTTCAAGTCCGCCATGCCCGAAGGCTACGTCCAGGAGCGCACCATCTTC  300

Query 447  TTCAAGGACGACGGCAACTACAAGACCCGCGCCGAGGTGAAGTTCGAGGGCGACACCCTG  506 Sbjct 301  TTCAAGGACGACGGCAACTACAAGACCCGCGCCGAGGTGAAGTTCGAGGGCGACACCCTG  360

Query 507  GTGAACCGCATCGAGCTGAAGGGCATCGACTTCAAGGAGGACGGCAACATCCTGGGGCAC  566 Sbjct 361  GTGAACCGCATCGAGCTGAAGGGCATCGACTTCAAGGAGGACGGCAACATCCTGGGGCAC  420

Query 567  AAGCTGGAGTACAACTACAACAGCCACAACGTCTATATCATGGCCGACAAGCAGAAGAAC  626 Sbjct 421  AAGCTGGAGTACAACTACAACAGCCACAACGTCTATATCATGGCCGACAAGCAGAAGAAC  480

Query 627  GGCATCAAGGTGAACTTCAAGATCCGCCACAACATCGAGGACGGCAGCGTGCAGCTCGCC  686 Sbjct 481  GGCATCAAGGTGAACTTCAAGATCCGCCACAACATCGAGGACGGCAGCGTGCAGCTCGCC  540

Query 687  GACCACTACCAGCAGAACACCCCCATCGGCGACGGCCCCGTGCTGCTGCCCGACAACCAC  746 Sbjct 541  GACCACTACCAGCAGAACACCCCCATCGGCGACGGCCCCGTGCTGCTGCCCGACAACCAC  600

Query 747  TACCTGAGCTACCAGTCCGCCCTGAGCAAAGACCCCAACGAGAAGCGCGATCACATGGTC  806 Sbjct 601  TACCTGAGCTACCAGTCCGCCCTGAGCAAAGACCCCAACGAGAAGCGCGATCACATGGTC  660

Query 807  CTGCTGGAGTTCGTGACCGCCGCCGGGATCACTCTCGGCATGGACGAGCTGTACAAG  863 Sbjct 661  CTGCTGGAGTTCGTGACCGCCGCCGGGATCACTCTCGGCATGGACGAGCTGTACAAG  717

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Overexpression


Figure 1:A SDS-PAGE gel of the overexpression of cheZ protein (50kDa). DH5 cells containing cheZ gene were inoculated in a 250mL LB media at 37oC, and the culture was induced with 1mM theothylline after the absorbance reached 0.6 a.u. at 600nm. The samples were collected every one hour after induction. The protein sample appears to be a monomer.

Figure 2:A growth curve for the overexpression of cheZ protein in DH5 cells. Arrow indicates the time when the culture was induced with 1mM theothylline.

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<script type="text/javascript">qm_create(0,false,0,500,false,false,false,false,false);