August/4 October 2009

1.sencivity test We conducted a preliminary test on one of our receiver circuits, the LuxR receiver. A GFP coding region was attached behind the receiver's pLux promoter and the construct designated X1. This was tested with AHL at 4 different concentrations: 0, 10nM, 1uM, 100uM. In addition, we also included a pLux-GFP (no LuxR coding region) circuit and a pTet-GFP (constitutive ON) circuit as 'negative' and 'positive' controls respectively. Pre-incubated cells were inoculated into 20ml LB-Amp medium and 1ml was taken out of each incubation flask, washed and resuspended in MiliQ water and fluorescence measured (excitation 488nm, emission 508nm) every hour. The experiment's results more or less agreed with a previous test on the similarly-constructed BBa_T9002, in that maximum fluorescence was obtained for AHL concentrations of around 10-20nM.

One problem that occurred to us halfway through the experiment was that since GFP fluorescence level probably correlates linearly with cell density, so we should have taken an OD600 (optical density at 600nm) reading with each fluorescence sampling, in order to measure actual per-cell GFP expression. This experiment will be repeated next week along with other signaling systems when their respective AHLs arrive. The pTet-GFP circuit which was supposed to constitutively express GFP, was found to have a very low level of fluorescence. The part was judged faulty and discarded (a new, properly fluorescing GFP part was constructed in its stead).

Another unexpected result was that the fluorescence for the 'negative control', pLux-GFP was found to be the highest. 2 things can be inferred: that 1) some leaky expression occurs at the pLux promoter *even in the absence of LuxR protein*, and 2) higher cell concentration, perhaps due to the absence of AHL or LuxR, resulted in a high overall GFP expression. 2.colony check sample no,    no. of colony 58                        ++    59                           +    60                         ++    61                         ++    62                       +++    63                          ++     64                        +++    65                           +

3.digaiton

K204067

K204068 ↓ 37°C, 2hr gel cut & purification ligation 3hr

4.min prep sample      conc. 2-18F      213.7 ng/uL

5.transformation sample no. 58, 59 , 60 , 61 , 62 , 63 , 64 , 65

6.color intensity check color parts check

7.digation

K204064

K204065 ↓ 37°C, 2hr gel cut & purification ligation O/N

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