LOCUS NC_009445 1428 bp DNA linear BCT 30-APR-2009 DEFINITION Bradyrhizobium sp. ORS278, complete genome. ACCESSION NC_009445 REGION: complement(1750716..1752143) VERSION NC_009445.1 GI:146337175 DBLINK Project:19575 KEYWORDS complete genome; PRO. SOURCE Bradyrhizobium sp. ORS278 ORGANISM Bradyrhizobium sp. ORS278 Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium. REFERENCE 1 (bases 1 to 1428) AUTHORS Giraud,E., Moulin,L., Vallenet,D., Barbe,V., Cytryn,E., Avarre,J.C., Jaubert,M., Simon,D., Cartieaux,F., Prin,Y., Bena,G., Hannibal,L., Fardoux,J., Kojadinovic,M., Vuillet,L., Lajus,A., Cruveiller,S., Rouy,Z., Mangenot,S., Segurens,B., Dossat,C., Franck,W.L., Chang,W.S., Saunders,E., Bruce,D., Richardson,P., Normand,P., Dreyfus,B., Pignol,D., Stacey,G., Emerich,D., Vermeglio,A., Medigue,C. and Sadowsky,M. TITLE Legumes symbioses: absence of Nod genes in photosynthetic bradyrhizobia JOURNAL Science 316 (5829), 1307-1312 (2007) PUBMED 17540897 REFERENCE 2 (bases 1 to 1428) AUTHORS Jaubert,M., Lavergne,J., Fardoux,J., Hannibal,L., Vuillet,L., Adriano,J.M., Bouyer,P., Pignol,D., Giraud,E. and Vermeglio,A. TITLE A singular bacteriophytochrome acquired by lateral gene transfer JOURNAL Unpublished REFERENCE 3 (bases 1 to 1428) AUTHORS Genoscope. CONSRTM 1:Genoscope, UMR 8030, France 2:LSTM, France 3:Dep SWC ; and BioTechnology Institute, USA 4:CEA/Cadarache,DEVM,UMR 6191, France 5:NCSB , USA 6:DOE , USA 7:DOE , USA 8:Universite Lyon1, France; UMR5557, France; IFR 41, France. TITLE Direct Submission JOURNAL Submitted (21-NOV-2006) Genoscope - Centre National de Sequencage : BP 191 91006 EVRY cedex - FRANCE (E-mail : seqref@genoscope.cns.fr - Web : www.genoscope.cns.fr) REFERENCE 4 (bases 1 to 1428) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (13-NOV-2004) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CU234118. Annotation data relative to BLAST similarities, COG assignations, enzymatic function prediction (PRIAM software), TMHMM and SignalP predictions, and synteny results (Syntonizer software) are available in FrankiaScope database via the MaGe annotation system http://www.genoscope.cns.fr/agc/mage/frankia. Each annotation includes a confidence level as follow: 1 : Function experimentally demonstrated in the studied organism 2a : Function of homologous gene experimentally demonstrated in an other organism 2b : Function of strongly homologous gene 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology 4 : Homologs of previously reported genes of unknown function 5 : No homology to any previously reported sequences 6 : Doubtful CDS 7 : Gene remnant. COMPLETENESS: full length. FEATURES Location/Qualifiers source 1..1428 /organism="Bradyrhizobium sp. ORS278" /mol_type="genomic DNA" /strain="ORS278" /db_xref="taxon:114615" gene 1..1428 /gene="ppsR1" /locus_tag="BRADO1635" /db_xref="GeneID:5115149" CDS 1..1428 /gene="ppsR1" /locus_tag="BRADO1635" /function="3.1.2.4 : Complex regulation" /function="3.1.2.2 : Activator" /experiment="publication(s) with functional evidences, PMID:15304477, 14734565, 11114184, 15948946, 15950121, 12000965" /note="Evidence 1 : Function experimentally demonstrated in the studied organism; PubMedId : 15304477, 14734565, 11114184, 15948946, 15950121, 12000965; Product type r : regulator" /codon_start=1 /transl_table=11 /product="Fis family transcriptional regulator" /protein_id="YP_001203751.1" /db_xref="GI:146338703" /db_xref="GeneID:5115149" /translation="MRAFRAPKESLGDLNADVAAMLVAAASDIALALDADGNIQDLAF QQAGLPLELKNTDEWIGRSWQATVSEESQTKPELLLAEASERKVSRWREVRYPAARGP DIPILFAVVAIKGAARYIAVGRDVRATAALQQKLIEAQVAIERDYSRMRNAESRYRIL FQITAEPVLIIDAASHRIVEANPAAAALLDHGAANLIGKLFPDALLIDDLAMSQSLSL AIRSQGKIERAKVTLDGGRDYLLDGTFFRQDTSSFFLLRFSPQYGQPALPKASDVNTQ LVQFVESAPDGFVITDMDGRLLHANATFLQLAQIENMHQIMGETIDRWIGKSAVDFSV MLTNLRQHGTLKLFSSVVRGEHGSPVDVEISATTVGAPGQARLGFTIRNVGPRISPDG ADHAFIPRSREQLAELIGRVPLKELVRETTDVIERMCIETALKLTGDNRATAAEMLGL SRQSLYVKLRRYGMAEPSEEDSQLE" ORIGIN 1 gtgagggcgt tcagagctcc gaaagagtcg cttggcgatc tcaatgcgga tgttgcggcc 61 atgctggtgg ctgcagcctc cgacattgcg ctcgcgctcg acgccgacgg caacatccag 121 gatctggcct ttcagcaggc cggtctcccg cttgaattga aaaacacaga cgagtggatc 181 ggccgatcct ggcaagcaac agtgtccgag gaaagccaga ccaagccaga gctgctgctt 241 gccgaagcct cggagcgcaa ggtgtcgcgc tggcgcgagg tgcgctaccc ggccgcgcgc 301 gggcctgaca tcccgatcct gttcgcggtc gtcgcgatca agggcgcggc ccgctacatc 361 gcggtcggcc gcgatgtgcg cgccaccgca gccctccagc agaagctgat cgaggcgcag 421 gttgcgatcg agcgcgacta ctcgcgcatg cgcaatgccg aatcgcgcta ccgtatcctg 481 tttcagatca ccgccgagcc ggtcctgatc atcgatgcgg cgagccatcg catcgtcgag 541 gccaatccgg ccgccgccgc tttgctcgac cacggcgccg ccaacctgat cggcaagctg 601 tttcccgacg cgctgctgat cgacgatctg gcgatgtcac aatcgctgtc gctggcgatc 661 cgctcgcagg gcaagatcga gcgcgccaag gtgacgctcg acggtggccg cgactatctg 721 ctcgacggca ccttcttccg gcaggacacc tcctcgttct tcctgctgcg gttctcgccg 781 caatacggcc agccggcgct gccgaaggcg tccgacgtca acacccagct ggtgcagttc 841 gtcgaatcgg cgcccgacgg cttcgtcatc accgacatgg atggccgcct gctgcacgcc 901 aacgccacct tcctgcagct cgcccagatc gagaacatgc accagatcat gggcgagacg 961 atcgaccgct ggatcggcaa gtcggcggtc gacttctcgg tgatgctgac caatctgcgc 1021 cagcacggca ccttgaagct gttctccagc gtggtccggg gcgagcacgg ctcgccggtc 1081 gatgtcgaga tctcggcgac cacggtcggc gcgcccggcc aggcccggct cggcttcacc 1141 attcgcaatg tcggcccgcg catctccccc gacggcgccg atcacgcctt cattccgcgc 1201 tcgcgcgagc agctcgccga actgattggc cgcgtgccgc tgaaggagct ggtgcgcgag 1261 accaccgacg tgatcgagcg gatgtgcatc gagaccgcgc tcaagctgac cggagacaac 1321 cgcgccaccg cagccgaaat gctcggcctc agccgccaga gcctctacgt caagctcaga 1381 cgctacggca tggccgagcc aagcgaagaa gacagtcagt tggaatag //