LOCUS NC_009445 1371 bp DNA linear BCT 30-APR-2009 DEFINITION Bradyrhizobium sp. ORS278, complete genome. ACCESSION NC_009445 REGION: complement(1744574..1745944) VERSION NC_009445.1 GI:146337175 DBLINK Project:19575 KEYWORDS complete genome; PRO. SOURCE Bradyrhizobium sp. ORS278 ORGANISM Bradyrhizobium sp. ORS278 Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium. REFERENCE 1 (bases 1 to 1371) AUTHORS Giraud,E., Moulin,L., Vallenet,D., Barbe,V., Cytryn,E., Avarre,J.C., Jaubert,M., Simon,D., Cartieaux,F., Prin,Y., Bena,G., Hannibal,L., Fardoux,J., Kojadinovic,M., Vuillet,L., Lajus,A., Cruveiller,S., Rouy,Z., Mangenot,S., Segurens,B., Dossat,C., Franck,W.L., Chang,W.S., Saunders,E., Bruce,D., Richardson,P., Normand,P., Dreyfus,B., Pignol,D., Stacey,G., Emerich,D., Vermeglio,A., Medigue,C. and Sadowsky,M. TITLE Legumes symbioses: absence of Nod genes in photosynthetic bradyrhizobia JOURNAL Science 316 (5829), 1307-1312 (2007) PUBMED 17540897 REFERENCE 2 (bases 1 to 1371) AUTHORS Jaubert,M., Lavergne,J., Fardoux,J., Hannibal,L., Vuillet,L., Adriano,J.M., Bouyer,P., Pignol,D., Giraud,E. and Vermeglio,A. TITLE A singular bacteriophytochrome acquired by lateral gene transfer JOURNAL Unpublished REFERENCE 3 (bases 1 to 1371) AUTHORS Genoscope. CONSRTM 1:Genoscope, UMR 8030, France 2:LSTM, France 3:Dep SWC ; and BioTechnology Institute, USA 4:CEA/Cadarache,DEVM,UMR 6191, France 5:NCSB , USA 6:DOE , USA 7:DOE , USA 8:Universite Lyon1, France; UMR5557, France; IFR 41, France. TITLE Direct Submission JOURNAL Submitted (21-NOV-2006) Genoscope - Centre National de Sequencage : BP 191 91006 EVRY cedex - FRANCE (E-mail : seqref@genoscope.cns.fr - Web : www.genoscope.cns.fr) REFERENCE 4 (bases 1 to 1371) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (13-NOV-2004) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CU234118. Annotation data relative to BLAST similarities, COG assignations, enzymatic function prediction (PRIAM software), TMHMM and SignalP predictions, and synteny results (Syntonizer software) are available in FrankiaScope database via the MaGe annotation system http://www.genoscope.cns.fr/agc/mage/frankia. Each annotation includes a confidence level as follow: 1 : Function experimentally demonstrated in the studied organism 2a : Function of homologous gene experimentally demonstrated in an other organism 2b : Function of strongly homologous gene 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology 4 : Homologs of previously reported genes of unknown function 5 : No homology to any previously reported sequences 6 : Doubtful CDS 7 : Gene remnant. COMPLETENESS: full length. FEATURES Location/Qualifiers source 1..1371 /organism="Bradyrhizobium sp. ORS278" /mol_type="genomic DNA" /strain="ORS278" /db_xref="taxon:114615" gene 1..1371 /gene="ppsR2" /locus_tag="BRADO1629" /db_xref="GeneID:5115876" CDS 1..1371 /gene="ppsR2" /locus_tag="BRADO1629" /function="3.1.2.4 : Complex regulation" /function="3.1.2.3 : Repressor" /experiment="publication(s) with functional evidences, PMID:12000965, 15304477, 15948946" /note="Evidence 1 : Function experimentally demonstrated in the studied organism; PubMedId : 12000965, 15304477, 15948946; Product type r : regulator" /codon_start=1 /transl_table=11 /product="transcriptional regulator PpsR2" /protein_id="YP_001203745.1" /db_xref="GI:146338697" /db_xref="GeneID:5115876" /translation="MAEFHGPRPDVTLLLDMDGVIREATLSPNMSAENVDAWLGRAWS EIVDDASEKIERIMQDTKRTGISAFRQITQRFPSGLELPMEFTTVLLGGRAGMLAIGK NLQAVAELQARLISAQQTIERDYWRLREIETRYRLVIEDSNEAVLLTKVSDLRIVEAN RTAAAALGVSNRRRDNLVGREFLHEIPEKDREPVELMLRRVRDQGKAPGIVIHLGEDA APWMLRGSLMTSDNAPMFLLQMAPIGKSIQPGPVTDDPEGLIDNLPDAVLSIDATGTI KRANRAFLDLVEIGSKEALIGEKLSRWLTRPGADLAVLLSNVERHGMVRLLSTTIQGE LGTETEVEISAAAHGQDGQRRIGLVLRNIARRLSPTAEHDNLRSALAGLNESVGKTPL RDLVRSTVEVVEQHYVRAALELANGNRTSAAEILGLSRQSLYAKLDRYNLSQLEENGE ETEKGS" ORIGIN 1 atggccgagt ttcacggtcc acgacccgac gtgacattgc tgctcgacat ggacggcgtg 61 atccgcgagg cgacgctgtc tccgaacatg tcggcggaga acgttgacgc ctggctcggc 121 cgcgcgtggt ccgagatcgt cgatgatgcg agcgaaaaga tcgagcgcat catgcaggac 181 accaagcgca ccggcatttc cgcgttccgc cagatcacgc aaaggttccc gagcggcctc 241 gagctgccga tggaattcac caccgtgctg ctcggcggcc gcgccggcat gctggcgatc 301 ggcaagaacc tgcaggcggt cgccgagttg caggcgcggc tgatctcggc gcagcagacc 361 atcgaacgcg actattggcg tctgcgcgag atcgagaccc gctaccgcct ggtgatcgag 421 gattccaacg aggcggtgct gctgaccaag gtctcggatc tgcgcatcgt cgaggccaac 481 cgcacggccg ccgccgcgct cggcgtctcg aaccggcgcc gcgacaatct ggtcggccgc 541 gagttcctgc acgagattcc cgagaaagac cgcgagccgg tcgagctgat gctccggcgg 601 gtgcgcgacc agggcaaggc cccgggcatc gtgatccatc tcggcgagga cgccgcgccc 661 tggatgctcc ggggctcgct gatgaccagc gataacgcgc cgatgttcct gctgcagatg 721 gcgccgatcg gcaagtcgat ccagccgggc cccgtgaccg acgatccgga ggggctaatc 781 gacaatctcc ccgatgccgt cctgagcatc gacgccaccg gcacgatcaa gcgcgccaac 841 cgggccttcc tggaccttgt cgagatcggc tcgaaagagg cgctcatcgg cgagaagctg 901 agccgctggc tgacgcggcc cggcgccgac ctggcggtgc tgctctccaa tgtcgagcgc 961 cacggcatgg tccggctgct gtcgaccacc atccagggcg agctcggaac cgagacggag 1021 gtcgagattt cggccgcggc gcatgggcaa gatggccagc gccggatcgg cctcgtcctg 1081 cgcaacatcg cgcggcggtt gtcgcccaca gccgagcatg acaatctcag gtcggcgctc 1141 gccggtctca acgagtcggt cggcaagacg ccgctgcgcg atctggtgcg gagcaccgtg 1201 gaggtcgtcg agcagcatta tgtccgcgcc gcgctggaac tcgccaatgg gaaccgcacc 1261 tcggcggccg aaattctggg cctgagccgc cagagccttt acgccaagct tgatcggtat 1321 aatctgagcc aactcgaaga aaacggcgag gaaaccgaaa aggggagcta g //