http://2009.igem.org/wiki/index.php?title=Minnesota/11_June_2009&feed=atom&action=historyMinnesota/11 June 2009 - Revision history2024-03-29T12:39:55ZRevision history for this page on the wikiMediaWiki 1.16.5http://2009.igem.org/wiki/index.php?title=Minnesota/11_June_2009&diff=32933&oldid=prevPatsmad at 19:23, 29 July 20092009-07-29T19:23:34Z<p></p>
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<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>Most group members continued to learn MATLAB, Linux commands, and html as issues presented themselves. One major setback was the realization that designgui could not produce non-linear parameter variation. This is unfortunate for the following reason:<br><br></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>Most group members continued to learn MATLAB, Linux commands, and html as issues presented themselves. One major setback was the realization that designgui could not produce non-linear parameter variation. This is unfortunate for the following reason:<br><br></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr>
<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div>Essentially, the aTc concentrations in the models without a lac operon vary from 0 to 260 molecules per cell, but not linearly. The concentrations tested are 0, 1, 13, 65, 130, 260 molecules per cell. Without the ability to vary this parameter non-linearly we are forced to created 6 separate .nc-files for each model we run through the supercomputer. A work around will try to be determined, or the designGUI modified in order to facilitate this in the coming weeks.</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>Essentially, the aTc concentrations in the models without a lac operon vary from 0 to 260 molecules per cell, but not linearly. The concentrations tested are 0, 1, 13, 65, 130, 260 molecules per cell. Without the ability to vary this parameter non-linearly we are forced to created 6 separate .nc-files for each model we run through the supercomputer. A work around will try to be determined, or the designGUI modified in order to facilitate this in the coming weeks<ins class="diffchange diffchange-inline">. This is important to get done before ever attempting a TTL model since with a lac operon, IPTG becomes a factor, and without non-linear variation of parameters 36 separate .nc-files would need to be created per model to get accurate results</ins>.</div></td></tr>
</table>Patsmadhttp://2009.igem.org/wiki/index.php?title=Minnesota/11_June_2009&diff=32931&oldid=prevPatsmad at 19:22, 29 July 20092009-07-29T19:22:19Z<p></p>
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<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>|'''[[Minnesota/10 June 2009|Go to Previous Day (June 10)]]'''|| width=158|'''[[Minnesota/12 June 2009|Go to Next Day (June 12)]]'''</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>|'''[[Minnesota/10 June 2009|Go to Previous Day (June 10)]]'''|| width=158|'''[[Minnesota/12 June 2009|Go to Next Day (June 12)]]'''</div></td></tr>
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<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;">Most group members continued to learn MATLAB, Linux commands, and html as issues presented themselves. One major setback was the realization that designgui could not produce non-linear parameter variation. This is unfortunate for the following reason:<br><br></ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;"></ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;">Essentially, the aTc concentrations in the models without a lac operon vary from 0 to 260 molecules per cell, but not linearly. The concentrations tested are 0, 1, 13, 65, 130, 260 molecules per cell. Without the ability to vary this parameter non-linearly we are forced to created 6 separate .nc-files for each model we run through the supercomputer. A work around will try to be determined, or the designGUI modified in order to facilitate this in the coming weeks.</ins></div></td></tr>
</table>Patsmadhttp://2009.igem.org/wiki/index.php?title=Minnesota/11_June_2009&diff=30180&oldid=prevBswiniar: New page: {|style="align:left" width="965" |- |''' Back to Notebook Home''' |- |'''Go to Previous Day (June 10)'''|| width=158|'''[[Minnesota/...2009-07-28T15:33:13Z<p>New page: {|style="align:left" width="965" |- |'''<a href="/Team:Minnesota/Modeling" title="Team:Minnesota/Modeling"> Back to Notebook Home</a>''' |- |'''<a href="/Minnesota/10_June_2009" title="Minnesota/10 June 2009">Go to Previous Day (June 10)</a>'''|| width=158|'''[[Minnesota/...</p>
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