From 2009.igem.org
Here is the first incarnation of the TNN model (many future models will simply change this one):
Reaction
| Forward Kinetic Constant
| Reverse Kinetic Constant
|
RNAp + lacP + lacI4:lacO1 -> RNAp:lacP | 6.23E+05 |
|
RNAp + lacP + lacO1 ↔ RNAp:lacP | 1E+07 | 1
|
RNA:lacP -> RNAp:lacP* | .01 |
|
RNAp:lacP* -> lacP + lacO1 + RNAp:DNAgfp | 30 |
|
RNAp:DNAgfp -> RNAp + gfp_mRNA | 30 |
|
gfp_mRNA + rib -> rib:gfp_mRNA | 100000 |
|
rib:gfp_mRNA -> rib:gfp_mRNA_1 + gfp_mRNA | 33 |
|
rib:gfp_mRNA_1 -> rib + gfp | 33 |
|
tetR2 + aTc ↔ tetR2:aTc | 2E+09 | 4E-04
|
tetR2:aTc + aTc ↔ tetR2:aTc2 | 1E+08 | 1E-03
|
tetR2:aTc + tetO1 ↔ tetR2:tetO1:aTc | 1E+08 | 1
|
tetR2:aTc2 + tetO1 ↔ tetR2:tetO1:aTc2 | 1E+08 | 1E+05
|
tetR2:tetO1 + aTc ↔ tetR2:tetO1:aTc | 1E+08 | 1E-03
|
tetR2:tetO1:aTc + aTc ↔ tetR2:tetO1:aTc2 | 1E+08 | 1E-03
|
tetR2 -> Ø | 2.89E-04 |
|
tetR2:aTc -> aTc | 2.89E-04 |
|
tetR2:aTc2 -> 2 aTc | 2.89E-04 |
|
tetR2 + nsDNA ↔ tetR2:nsDNA | 1000 | 3.2409
|
tetR2:aTc + nsDNA ↔ tetR2:aTc:nsDNA | 1000 | 3.2409
|
tetR2:aTc:nsDNA -> aTc + nsDNA | 1.93E-04 |
|
tetR2:nsDNA -> nsDNA | 1.93E-04 |
|
Ø -> tetR2 | 1E-11 |
|
Ø -> aTc | 3.3E-04 |
|
gfp_mRNA -> Ø | 1.16E-03 |
|
gfp -> Ø | 3.21E-05 |
|