Team:EPF-Lausanne/Team Management

From 2009.igem.org

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Strickland et al. Light-activated DNA binding in a designed allosteric protein. Proceedings of the National Academy of Sciences (2008) vol. 105 (31) pp. 10709
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Ávila-Pérez et al. Blue Light Activates the σB-Dependent Stress Response of Bacillus subtilis via YtvA. Journal of bacteriology (2006)
 +
 +
Jaubert et al. Light and redox control of photosynthesis gene expression in Bradyrhizobium: dual roles of two PpsR. Journal of Biological Chemistry (2004)
 +
 +
Lawson et al. E. coli trp repressor forms a domain-swapped array in aqueous alcohol. Structure (2004) vol. 12 (6) pp. 1099-1108
 +
 +
Cusanovich and Meyer. Photoactive yellow protein: a prototypic PAS domain sensory protein and development of a common …. BIOCHEMISTRY-PENNSYLVANIA THEN WASHINGTON- (2003)
 +
 +
Harper et al. Structural basis of a phototropin light switch. Science (2003)
 +
 +
Baliga et al. Coordinate regulation of energy transduction modules in Halobacterium sp. analyzed by a global systems approach. Proceedings of the National Academy of Sciences (2002) vol. 99 (23) pp. 14913-14918
 +
 +
Baliga et al. Genomic and genetic dissection of an archaeal regulon. Proceedings of the National Academy of Sciences (2001) vol. 98 (5) pp. 2521
 +
 +
Reedstrom et al. Affinity and specificity of trp repressor-DNA interactions studied with fluorescent oligonucleotides. Journal of Molecular Biology (1997) vol. 273 (3) pp. 572-585
 +
 +
Gropp and Betlach. The bat gene of Halobacterium halobium encodes a trans-acting oxygen inducibility factor. Proceedings of the National Academy of Sciences (1994)
 +
 +
Shand and Betlach. Expression of the bop gene cluster of Halobacterium halobium is induced by low oxygen tension and by …. Journal of bacteriology (1991)
 +
 +
Bass et al. Mutant Trp repressors with new DNA-binding specificities. Science (1988) vol. 242 (4876) pp. 240-245
 +
 +
Bass et al. DNA specificity determinants of Escherichia coli tryptophan repressor binding. Genes & Development (1987) vol. 1 (6) pp. 565-572

Revision as of 12:22, 2 June 2009

Contents

Summer plan

Who is coming which week this summer !

Summer Planning

Brainstorming

Our project ideas so far are listed in the Brainstorming section

Team Meetings

Meetings history and reports: all team's meetings so far with meeting contents, attending members...

Upcoming meetings: stuff to talk about during next meeting


To do list

1) LOVTAP
LOVTAP to do list
2) R-BphP
R-BphP to do list
3) Modelling
Modelling to do list

Comments

  1. find the purification protocols etc. in the supplementary material, not by asking the authors
  2. engineering the trp repressor to bind to other sequences should be in the LOVTAP to do list
  3. annotate the lovtap sequence to show where the various functional domains are
  4. add all relevant references in the format i have given below, including the PNAS paper, etc.

References

  1. Photoregulation in prokaryotes. Purcell EB, Crosson S. Curr Opin Microbiol. 2008 Apr;11(2):168-78. Epub 2008 Apr 8. Review. Pubmed


Strickland et al. Light-activated DNA binding in a designed allosteric protein. Proceedings of the National Academy of Sciences (2008) vol. 105 (31) pp. 10709

Ávila-Pérez et al. Blue Light Activates the σB-Dependent Stress Response of Bacillus subtilis via YtvA. Journal of bacteriology (2006)

Jaubert et al. Light and redox control of photosynthesis gene expression in Bradyrhizobium: dual roles of two PpsR. Journal of Biological Chemistry (2004)

Lawson et al. E. coli trp repressor forms a domain-swapped array in aqueous alcohol. Structure (2004) vol. 12 (6) pp. 1099-1108

Cusanovich and Meyer. Photoactive yellow protein: a prototypic PAS domain sensory protein and development of a common …. BIOCHEMISTRY-PENNSYLVANIA THEN WASHINGTON- (2003)

Harper et al. Structural basis of a phototropin light switch. Science (2003)

Baliga et al. Coordinate regulation of energy transduction modules in Halobacterium sp. analyzed by a global systems approach. Proceedings of the National Academy of Sciences (2002) vol. 99 (23) pp. 14913-14918

Baliga et al. Genomic and genetic dissection of an archaeal regulon. Proceedings of the National Academy of Sciences (2001) vol. 98 (5) pp. 2521

Reedstrom et al. Affinity and specificity of trp repressor-DNA interactions studied with fluorescent oligonucleotides. Journal of Molecular Biology (1997) vol. 273 (3) pp. 572-585

Gropp and Betlach. The bat gene of Halobacterium halobium encodes a trans-acting oxygen inducibility factor. Proceedings of the National Academy of Sciences (1994)

Shand and Betlach. Expression of the bop gene cluster of Halobacterium halobium is induced by low oxygen tension and by …. Journal of bacteriology (1991)

Bass et al. Mutant Trp repressors with new DNA-binding specificities. Science (1988) vol. 242 (4876) pp. 240-245

Bass et al. DNA specificity determinants of Escherichia coli tryptophan repressor binding. Genes & Development (1987) vol. 1 (6) pp. 565-572




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