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Buoyancy related literature:

Our metal related literature by subject:

Cu Zn As Cd Sb Hg
Importers GlpF Meng2004, Rosen2009 Meng2004
HmtA Lewinson2009 Lewinson2009
Exporters ArsB Tisa1989, Carlin1995,

Dey1995 Rosen1996, Meng2004, Summers2009

Tisa1989, Carlin1995, Rosen1996, Meng2004, Summers2009
Accumulators ArsR Carlin1995, Rosen1996, Chen1997, Kostal2004, Rensing2005, Summers2009 Carlin1995, Rosen1996, Summers2009
ArsD Chen1997, Lin2007-1/2, Summers2009 Chen1997, Lin2007-1/2, Summers2009
SmtA Shi1992 Shi1992, Turner1995, Robinson2001, Blindauer2002 Shi1992 Shi1992
MT Morris1999,Ngu2006,Singh2008, Merrifield2004 Deng2007 Chen1998
Unclassified Brady1994, Gold2008 Chang1998, Blindauer2001 , Kao2008 Brady1994, Chang1998, Deng2008
Promoters Mills1994 , Khunajakr1999 , Liu2004, Moore2005, Ettema2006 , Liu2006, Liu2008, Catini2008 , Nawapan2009 Thelwell1998, Liu2004, Moore2005, Hirose2006 , Kloosterman2008 Summers2009 Liu2004, Moore2005
Ensarija Star (soft edges).png Uri Alon (2007). Introduction to systems biology: design principles of biological circuits Chapman & Hall/CRC. ISBN 978-1-58488-642-6
W.W. Baldwin, Richard Myer, Nicole Powell, et al (August 1995). "Buoyant density of Escherichia coli is determined solely by the osmolarity of the culture medium". Archives of Microbiology 164(2): 155-157
Andreas Beyer, Jens Hollunder, Heinz-Peter Nasheuer and Thomas Wilhelm (August 2004). "Post-transcriptional Expression Regulation in the Yeast Saccharomyces cerevisiae on a Genomic Scale". Molecular & Cellular Proteomics 3: 1083-1092
Blancato VS, Magni C, Lolkema JS. (October 2006). "Functional characterization and Me ion specificity of a Ca-citrate transporter from Enterococcus faecalis". FEBS journal 273(22): 5121-5130
C.C. Bowen and T.E. Jensen ( March 1965). "Blue-Green Algae: Fine Structure of the Gas Vacuoles". Science 147(3664): 1460 - 1462
Claudia A. Blindauer, Mark D. Harrison, Andrea K. Robinson, et al (2002). "Multiple bacteria encode metallothioneins and SmtA-like zinc fingers". Molecular Microbiology 45(5): 1421-1432
Blindauer CA, Harrison MD, et al (2001). "A metallothionein containing a zinc finger within a four-metal cluster protects a bacterium from zinc toxicity.". Proc Natl Acad Sci USA. 98(17): ):9593-9598
Busenlehner L.S., Pennella M.A. & Giedroc D.P., (June 2003) "The SmtB/ArsR family of metalloregulatory transcriptional repressors: structural insights into prokaryotic metal resistance". FEMS Microbiology Reviews, 2003, 27, 131-143.
Brady D, Rose PD, Duncan JR. (1994). "The use of hollow fiber cross-flow microfiltration in bioaccumulation and continuous removal of heavy metals from solution by Saccharomyces cerevisiae.". Biotechnol Bioeng. 44(11):1362-1366
J.E. Bylund, M.A. Haines, K. Walsh, et al (September 1991). "Buoyant density studies of several mecillinam-resistant and division mutants of Escherichia coli". Journal of Bacteriology 173(17): 5396-5402
Cadosch D, Meagher J, Gautschi OP, Filgueira L. (December 2008). "Uptake and intracellular distribution of various metal ions in human monocyte-derived dendritic cells detected by Newport Green DCF diacetate ester". Journal Neurosci Methods. 178(1):182-187
Cantini F., Banci L. & Solioz M., (October 2008) "The copper-responsive repressor CopR of Lactococcus lactis is a ‘winged helix’ protein". Biochem. J., 2009, 417, 493–499.
Arthur Carlin, Weiping Shi, Saibal Dey and Barry P. Rosen (February 1995). "The ars Operon of Escherichia coli Confers Arsenical and Antimonial Resistance". Journal of Bacteriology 177(4): 981-986
Ensarija Star (soft edges).png Yanxiang Chen and Barry P. Rosen (May 1997). "Metalloregulatory Properties of the ArsD Repressor". The Journal of Biological Chemistry 272(22): 14257-14262
Chen S, Wilson DB. (1997). "Genetic engineering of bacteria and their potential for Hg2+ bioremediation ". Biodegradation 8(2): 97-103
Chen S, Kim E, Shuler ML, Wilson DB. (1998). "Hg2+ removal by genetically engineered Escherichia coli in a hollow fiber bioreactor". Biotechnol Prog. 14(5):667-671
Chen P.R. & He C., (March 2008) "Selective recognition of metal ions by metalloregulatory proteins, Current Opinion in Chemical Biology". 2008, 12, 214–221.
Chang CC, Liao WF, Huang PC. (1998). "Cysteine contributions to metal binding preference for Zn/Cd in the beta-domain of metallothionein". Protein Eng. 11(1):42-46
Deng X, Li QB, Lu YH, Sun DH, Huang YL, Chen XR. (2003). "Bioaccumulation of nickel from aqueous solutions by genetically engineered Escherichia coli.". Water Res. 37(10):2505-2511
Deng X, Yi XE, Liu G. (2007). "Cadmium removal from aqueous solution by gene-modified Escherichia coli JM109". Journal Hazard Mater. 139(2):340-344
Deng X, Hu ZL, Yi XE. (May 2008). "Continuous treatment process of mercury removal from aqueous solution by growing recombinant E. coli cells and modeling study". Journal Hazard Mater. 153(1-2):487-492
Saibal Dey, Barry P. Rosen (1995). "Dual Mode of Energy Coupling by the Oxyanion Translocating ArsB Protein". JOURNAL OF BACTERIOLOGY 177(2): 385–389
Thijs J. G. Ettema, Arie B. Brinkman et al (2006). "Molecular characterization of a conserved archaeal copper resistance (cop) gene cluster and its copper-responsive regulator in Sulfolobus solfataricus P2". Microbiology 152: 1969-1979
Fowler BA. (1987). "Intracellular compartmentation of metals in aquatic organisms: roles in mechanisms of cell injury". Environ Health Perspect. 7(1): 121-128
Michael A. Gilchrist (2007). "Combining Models of Protein Translation and Population Genetics to Predict Protein Production Rates from Codon Usage Patterns". Molecular Biology and Evolution 24(11): 2362-2372
Gold B, Deng H, et al(2008). "Identification of a copper-binding metallothionein in pathogenic mycobacteria". Nat Chem Biol. 4(10): 609-616
Chetan T. Goudara, Jagadeesh R. Sonnadb and Ronald G. Duggleby (January 1999). "Parameter estimation using a direct solution of the integrated Michaelis-Menten equation". Biochimica et Biophysica Acta (BBA) - Protein Structure and Molecular Enzymology 1429(2): 377-383
Basak Guven and Alan Howarda (September 2007). "Identifying the critical parameters of a cyanobacterial growth and movement model by using generalised sensitivity analysis". Ecological Modelling 207(1): 11-21
Hirose K, Ezaki B, Tong L Nakashima S, et al (August 2005) "Diamide stress induces a metallothionein BmtA through a repressor BxmR and is modulated by Zn-inducible BmtA in the cyanobacterium Oscillatoria brevis". Toxicology Letters, 2006, 163, 250–256.
M.H.N. Hoefnagel, A. van der Burgt, D.E. Martens, et al (March 2002). "Time Dependent Responses of Glycolytic Intermediates in a Detailed Glycolytic Model of Lactococcus Lactis During Glucose Run-Out Experiments". Molecular Biology Reports 29: 157-161
Daryl P. Holland, Anthony E. Walsby (January 2009). "Digital recordings of gas-vesicle collapse used to measure turgor pressure and cell–water relations of cyanobacterial cells ". Journal of Microbiological Methods 77: 214-224
Kao WC, Huang CC, Chang JS (October 2008). "Biosorption of nickel, chromium and zinc by MerP-expressing recombinant Escherichia coli.". J Hazard Mater. 158(1): 100-106
Jason R. Kelly, Adam J. Rubin, Joseph H. Davis, et al (March 2009). "Measuring the activity of BioBrick promoters using an in vivo reference standard". Journal of Biological Engineering 3: 4
Nongpanga Khunajakr, Chun-Qiang Liu et al (March 1999). "A plasmid-encoded two-component regulatory system involved in copper-inducible transcription in Lactococcus lactis". Gene229(1-1): 229-235
Tomas G. Kloosterman, Robert M. Witwicki et al (2008). "Opposite Effects of Mn2+ and Zn2+ on PsaR-Mediated Expression of the Virulence Genes pcpA, prtA, and psaBCA of Streptococcus pneumonia". J Bacterio190(15): 5382–5393
Ensarija Star (soft edges).png Jan Kostal, Rosanna Yang, Cindy H. Wu, et al (August 2004). "Enhanced Arsenic Accumulation in Engineered Bacterial Cells Expressing ArsR". Applied and Environmental Microbiology 70(8): 4582–4587
Lewinson O, Lee AT, Rees DC. (2009). "A P-type ATPase importer that discriminates between essential and toxic transition metals". PNAS 106(12): 4677-4682
Ensarija Star (soft edges).png Ning Li and Maura C. Cannon (May 1998). "Gas Vesicle Genes Identified in Bacillus megaterium and Functional Expression in Escherichia coli". Journal of Bacteriology 180(9): 2450–2458
Yung-Feng Lin, Jianbo Yang and Barry P. Rosen (April 2007). "ArsD Residues Cys12, Cys13, and Cys18 Form an As(III)-binding Site Required for Arsenic Metallochaperone Activity". The Journal of Biological Chemistry 282(23): 16783–16791
Yung-Feng Lin, Jianbo Yang and Barry P. Rosen (December 2007). "ArsD: an As(III) metallochaperone for the ArsAB As(III)-translocating ATPase". Journal of Bioenergetics and Biomembranes 39: 453-458
Tong Liu, Susumu Nakashima et al (April 2004) "A Novel Cyanobacterial SmtB/ArsR Family Repressor Regulates the Expression of a CPx-ATPase and a Metallothionein in Response to Both Cu(I)/Ag(I) and Zn(II)/Cd(II)". The Journal of Biological Chemistry, 2004, Vol. 279, No. 17, 17810–17818.
Tong Liu Arati Ramesh et al(December 2006). "CsoR is a novel Mycobacterium tuberculosis copper-sensing transcriptional regulator". Nature Chemical Biology 3: 60-68
Tong Liu, Xiaohua Chen, Zhen Ma, et al (September 2008) "A CuI-sensing ArsR family Metal Sensor Protein with a Relaxed Metal Selectivity Profile". Biochemistry, 2008, 47(40), 10564–10575.
Ensarija Star (soft edges).png Yu-Ling Meng, Zijuan Liu and Barry P. Rosen (February 2004). "As(III) and Sb(III) Uptake by GlpF and Efflux by ArsB in Escherichia coli". Journal of Biological Chemistry 279: 18334-18341
M. E. Merrifield, T. Ngu, M. J. Stillman et al (September 2004). "Arsenic binding to Fucus vesiculosus metallothionein.". Biochemical and Biophysical Research Communications 324 : 127–132
Scott D. Mills Chun-Keun Lim and Donald A. Cooksey (1994). "Purification and characterization of CopR, a transcriptional activator protein that binds to a conserved domain (cop box) in copper- inducible promoters of Pseudomonas syringae". Molecular and General Genetics MGG 244(4): 1432-1874
Charles M. Moore, Ahmed Gaballa et al (May 2005). "Genetic and physiological responses of Bacillus subtilis to metal ion stress". Molecular Microbiology57(1): 27-40
C.A. Morris, B. Nicolaus, V. Sampson et al (March 1999). "Identification and characterization of a recombinant metallothionein protein from a marine alga, Fucus vesiculosus". The Biochemical journal 338(2): 553-560
Sirikan Nawapan, Nisanart Charoenlap et al (August 2009). "Functional and Expression Analyses of the cop Operon, Required for Copper Resistance in Agrobacterium tumefaciens". American Society for Microbiology 191(16): 5159-5168
Ana Rute Neves, Ana Ramos, Marta C. Nunes, et al (1999). "In vivo nuclear magnetic resonance studies of glycolytic kinetics in Lactococcus lactis". Biotechnology and Bioengineering 64: 200-212
Thanh T. Ngu, M. Stillman (April 2006). "Arsenic Binding to Human Metallothionein". J. Am. Chem. Soc 128 (38): 12473–12483
Pennella M.A. & Giedroc D.P., (August 2005) "Structural determinants of metal selectivity in prokaryotic metal-responsive transcriptional regulator". BioMetals, 2005, 18, 413–428.
R.K. Poole (1977). "Fluctuations in Buoyant Density during the Cell Cycle of Escherichia coli K12". Journal of General Microbiology 98: 177-186
Christopher Rensing (June 2005). "Form and Function in Metal-Dependent Transcriptional Regulation: Dawn of the Enlightenment". Journal of Bacteriology 187(12): 3909–3912
Nigel J. Robinson, Simon K. Whitehall and Jennifer S. Cavet (2001). "Microbial Metallothioneins". Advances in Microbial Physiology 44: 183-213
Barry P. Rosen (August 1996). "Bacterial resistance to heavy metals and metalloids". Journal of Biological Inorganic Chemistry 1(4): 273-277
Barry P. Rosen and Zijuan Liu (April 2009). "Transport pathways for arsenic and selenium: A minireview". Environment International 35(3): 512-515
Russel Schwartz (2008). Biological modeling and simulation: a survey of practical models, algorithms, and numerical methods MIT Press. ISBN 978-0-262-19584-3
Jianguo Shi, William P. Lindsay, James W. Huckle (June 1992). "Cyanobacterial metallothionein gene expressed in Escherichia coli: Metal-binding properties of the expressed protein". FEBS Letters 303(2-3): 159-163
Shailendra Singh, Ashok Mulchandani, Wilfred Chen (February 2008). "Highly Selective and Rapid Arsenic Removal by Metabolically Engineered Escherichia coli Cells Expressing Fucus vesiculosus Metallothionein". MICROBIOLOGY 74(9): 2924–2927
Astrid C. Sivertsen, Marvin J. Bayro, et al ( april 2008). "Solid-State NMR Evidence for Inequivalent GvpA Subunits in Gas Vesicles". Journal of Molecular Biology 387(4): 1032-1039
Anne O. Summers (April 2009). "Damage control: regulating defenses against toxic metals and metalloids". Current Opinion in Microbiology 12(2): 138-144
Thelwell C., Robinson N.J. & Turner-Cavet J.S., "An SmtB-like repressor from Synechocystis PCC 6803 regulates a zinc exporter". Proc. Natl. Acad. Sci. USA, 1998, Vol. 95, 10728–10733.
Louis S. Tisa and Barry P. Rosen (January 1990). "Molecular characterization of an anion pump. The ArsB protein is the membrane anchor for the ArsA protein". The journal of biological chemistry 265(1): 190-194
Jennifer S. Turner, Nigel J. Robinson and Amit Gupta (March 1995). "Construction of Zn2+/Cd2+-tolerant cyanobacteria with a modified metallothionein divergon: Further analysis of the function and regulation of smt". Journal of Industrial Microbiology and Biotechnology 14(3-4): 259-264
A.E. Walsby (April 1979). "Average thickness of the gas vesicle wall in Anabaena flos-aquae". Journal of Molecular Biology 129(2): 279-285
A.E. Walsby (March 1994). "Gas Vesicles". Microbiological reviews 58(1): 94-144