Team:Groningen/Notebook/18 August 2009

From 2009.igem.org

(Difference between revisions)
(Transporters)
(Metal Accumulation)
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===Metal Accumulation===
===Metal Accumulation===
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{{todo| Restriction analysis MBP-ArsR}}
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{{done| Restriction analysis MBP-ArsR}}
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* [http://www.fermentas.com/catalog/re/fastpsti.htm PstI] & [http://www.fermentas.com/catalog/re/fastxbai.htm XbaI]
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<center>[[Image:MBP-ArsR_Fusion_protein_in_pSB1AC3_restricted_with_XbaI_%26_EcoRI_-_18august2009.jpg| 500px]]</center><br>
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1% Agarose (1xTBE) gel with restriction analysis of MBP-ArsR fusion protein plasmids, with selfcloser (1), sample (white colony) (2), sample (red colony??) (3). Expected sizes of positive construct are shown. Samples were digested using [http://www.fermentas.com/catalog/re/fastpsti.htm PstI] & [http://www.fermentas.com/catalog/re/fastxbai.htm XbaI], ~45 min 37 &deg;C.
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Sample MBP-ArsR (200) was isolated from red organims, indicating the presence of RFP or similar, this was however not engineered in this plasmid. Therefore a deviant restriction pattern was to be expected. It appears as if two different plasmids were present in this sample.
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===Vectors===
===Vectors===
{{todo| Restriction analysis metal promotors}}
{{todo| Restriction analysis metal promotors}}

Revision as of 13:49, 18 August 2009

Igemhomelogo.png

Wet

GVP Cluster

Transporters

HmtA curios about the dirty experiment. a 1% gel control will show if expected product is there. Unfortunately there was no product, the primer dimer changed and pcr 1 and 2 remain available. PCR again. Different program. Plus starting an other PCR1 and PCR2 to get new megaprimers.

Metal Accumulation

Restriction analysis MBP-ArsR

MBP-ArsR Fusion protein in pSB1AC3 restricted with XbaI & EcoRI - 18august2009.jpg

1% Agarose (1xTBE) gel with restriction analysis of MBP-ArsR fusion protein plasmids, with selfcloser (1), sample (white colony) (2), sample (red colony??) (3). Expected sizes of positive construct are shown. Samples were digested using PstI & XbaI, ~45 min 37 °C. Sample MBP-ArsR (200) was isolated from red organims, indicating the presence of RFP or similar, this was however not engineered in this plasmid. Therefore a deviant restriction pattern was to be expected. It appears as if two different plasmids were present in this sample.

Vectors

Restriction analysis metal promotors

Dry

April
MTWTFSS
    1 2 3 4 5
6 7 8 9 10 11 12
13 14 15 16 17 18 19
20 21 22 23 24 25 26
27 28 29 30
May
MTWTFSS
        1 2 3
4 5 6 7 8 9 10
11 12 13 14 15 16 17
18 19 20 21 22 23 24
25 26 27 28 29 30 31
June
MTWTFSS
1 2 3 4 5 6 7
8 9 10 11 12 13 14
15 16 17 18 19 20 21
22 23 24 25 26 27 28
29 30
July
MTWTFSS
    1 2 3 4 5
6 7 8 9 10 11 12
13 14 15 16 17 18 19
20 21 22 23 24 25 26
27 28 29 30 31
August
MTWTFSS
          1 2
3 4 5 6 7 8 9
10 11 12 13 14 15 16
17 18 19 20 21 22 23
24 25 26 27 28 29 30
31
September
MTWTFSS
  1 2 3 4 5 6
7 8 9 10 11 12 13
14 15 16 17 18 19 20
21 22 23 24 25 26 27
28 29 30
October
MTWTFSS
      1 2 3 4
5 6 7 8 9 10 11
12 13 14 15 16 17 18
19 20 21 22 23 24 25
26 27 28 29 30 31
November
MTWTFSS
            1
2 3 4 5 6 7 8
9 10 11 12 13 14 15
16 17 18 19 20 21 22
23 24 25 26 27 28 29
30