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Team:Newcastle/Modelling
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[[Image:Team Newcastle iGem 2009 08-07-09 no 7.JPG|300px|center]] | [[Image:Team Newcastle iGem 2009 08-07-09 no 7.JPG|300px|center]] | ||
| - | For computational modelling, we are using a number of technologies, including [[Team:Newcastle/Java|Java]], [[Team:Newcastle/Matlab|Matlab]], SBML and [[Team:Newcastle/CellML|CellML]]. | + | For computational modelling, we are using a number of technologies, including [[Team:Newcastle/Java|Java]], [[Team:Newcastle/Matlab|Matlab]], [[Team:Newcastle/Amazon EC2|Amazon EC2]], [[Team:Newcastle/Microbase|Microbase]], [[Team:Newcastle/SBML|SBML]] and [[Team:Newcastle/CellML|CellML]]. |
== Sub-projects == | == Sub-projects == | ||
| - | ===Stochastic Switch=== | + | === Stochastic Switch === |
| - | :'' See [[Team:Newcastle/Modelling/Stochastic]]'' | + | : '' See [[Team:Newcastle/Modelling/Stochastic|Stochastic Switch Model]]'' |
We are modelling our stochastic switch. | We are modelling our stochastic switch. | ||
| - | We also designed an | + | We also designed an inducible protein degradation system for our switch. |
| - | :'' See [[Team:Newcastle/Modelling/Degradation]]'' | + | : '' See [[Team:Newcastle/Modelling/Degradation|Degradation Model]]'' |
| - | === Population | + | === Population Modelling === |
| - | :'' See [[Team:Newcastle/Modelling/Population]]'' | + | : '' See [[Team:Newcastle/Modelling/Population|Population Simulation]]'' |
One of the models which we are producing is one concerning the population numbers of our bacteria. It looks at how our additions to the DNA may affect the growth of the bacterial population. | One of the models which we are producing is one concerning the population numbers of our bacteria. It looks at how our additions to the DNA may affect the growth of the bacterial population. | ||
| - | === Sporulation | + | === Sporulation Tuning === |
| - | <!--:'' See [[Team:Newcastle/Modelling/Tuning]]''--> | + | <!--: '' See [[Team:Newcastle/Modelling/Tuning]]''--> |
| - | :'' See [[Team:Newcastle/SporulationTuning#Modelling ]]'' | + | : '' See [[Team:Newcastle/SporulationTuning#Modelling|Sporulation Tuning Model]]'' |
Another of our models looks at tuning sporulation. | Another of our models looks at tuning sporulation. | ||
| - | === Metal | + | === Metal Intake === |
| - | :'' See [[Team:Newcastle/Modelling/MetalIntake]]'' | + | : '' See [[Team:Newcastle/Modelling/MetalIntake|Metal Intake Model]]'' |
Another of our models looks at metal intake. | Another of our models looks at metal intake. | ||
{{:Team:Newcastle/Footer}} | {{:Team:Newcastle/Footer}} | ||
{{:Team:Newcastle/Right}} | {{:Team:Newcastle/Right}} | ||
Revision as of 23:18, 20 October 2009
Project
Sub-projects
Wet Lab
Meetings
Planning
Links
Computational Modelling
For computational modelling, we are using a number of technologies, including Java, Matlab, Amazon EC2, Microbase, SBML and CellML.
Sub-projects
Stochastic Switch
We are modelling our stochastic switch.
We also designed an inducible protein degradation system for our switch.
Population Modelling
One of the models which we are producing is one concerning the population numbers of our bacteria. It looks at how our additions to the DNA may affect the growth of the bacterial population.
Sporulation Tuning
Another of our models looks at tuning sporulation.
Metal Intake
Another of our models looks at metal intake.
News
Events
- 20 – 21 June 2009 - Europe workshop (London)
- 23 – 24 June 2009 - UK iGEM meetup (Edinburgh)
- 23 October Practice Presentation (Newcastle)
- 23 October T-shirts are ready
- 27 October Practice Presentation (Sunderland)
- 27 October Poster is ready
- 30 October – 2 November 2009 - Jamboree (Boston)
Social Net
