Team:Stanford/NotebookPage/31 July 2009

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Home Project Modeling Parts Notebook Team SBOL-V

June
MTWTFSS
[http://2009.igem.org/Team:Stanford/NotebookPage/1_June_2009 1] [http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/2_June_2009&action=edit 2] [http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/3_June_2009&action=edit 3] [http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/4_June_2009&action=edit 4] [http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/5_June_2009&action=edit 5] [http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/6_June_2009&action=edit 6] [http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/7_June_2009&action=edit 7]
[http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/8_June_2009&action=edit 8] [http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/9_June_2009&action=edit 9] [http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/10_June_2009&action=edit 10] [http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/11_June_2009&action=edit 11] [http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/12_June_2009&action=edit 12] [http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/13_June_2009&action=edit 13] [http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/14_June_2009&action=edit 14]
[http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/15_June_2009&action=edit 15] [http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/16_June_2009&action=edit 16] [http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/17_June_2009&action=edit 17] [http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/18_June_2009&action=edit 18] [http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/19_June_2009&action=edit 19] [http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/20_June_2009&action=edit 20] [http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/21_June_2009&action=edit 21]
[http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/22_June_2009&action=edit 22] [http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/23_June_2009&action=edit 23] [http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/24_June_2009&action=edit 24] [http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/25_June_2009&action=edit 25] [http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/26_June_2009&action=edit 26] [http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/27_June_2009&action=edit 27] [http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/28_June_2009&action=edit 28]
[http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/29_June_2009&action=edit 29] [http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/30_June_2009&action=edit 30]
July
MTWTFSS
    [http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/1_July_2009&action=edit 1] [http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/2_July_2009&action=edit 2] [http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/3_July_2009&action=edit 3] [http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/4_July_2009&action=edit 4] [http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/5_July_2009&action=edit 5]
[http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/6_July_2009&action=edit 6] [http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/7_July_2009&action=edit 7] [http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/8_July_2009&action=edit 8] [http://2009.igem.org/Team:Stanford/NotebookPage/9_July_2009 9] [http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/10_July_2009&action=edit 10] [http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/11_July_2009&action=edit 11] [http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/12_July_2009&action=edit 12]
[http://2009.igem.org/Team:Stanford/NotebookPage/13_July_2009 13] [http://2009.igem.org/Team:Stanford/NotebookPage/14_July_2009 14] [http://2009.igem.org/Team:Stanford/NotebookPage/15_July_2009 15] [http://2009.igem.org/Team:Stanford/NotebookPage/16_July_2009 16] [http://2009.igem.org/Team:Stanford/NotebookPage/17_July_2009 17] [http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/18_July_2009&action=edit 18] [http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/19_July_2009&action=edit 19]
[http://2009.igem.org/Team:Stanford/NotebookPage/20_July_2009 20] [http://2009.igem.org/Team:Stanford/NotebookPage/21_July_2009 21] [http://2009.igem.org/Team:Stanford/NotebookPage/22_July_2009 22] [http://2009.igem.org/Team:Stanford/NotebookPage/23_July_2009 23] [http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/24_July_2009&action=edit 24] [http://2009.igem.org/Team:Stanford/NotebookPage/25_July_2009 25] [http://2009.igem.org/Team:Stanford/NotebookPage/26_July_2009 26]
[http://2009.igem.org/Team:Stanford/NotebookPage/27_July_2009 27] [http://2009.igem.org/Team:Stanford/NotebookPage/28_July_2009 28] [http://2009.igem.org/Team:Stanford/NotebookPage/29_July_2009 29] [http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/30_July_2009&action=edit 30] [http://2009.igem.org/Team:Stanford/NotebookPage/31_July_2009 31]
August
MTWTFSS
          [http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/1_August_2009&action=edit 1] [http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/2_August_2009&action=edit 2]
[http://2009.igem.org/Team:Stanford/NotebookPage/3_August_2009 3] [http://2009.igem.org/Team:Stanford/NotebookPage/4_August_2009 4] [http://2009.igem.org/Team:Stanford/NotebookPage/5_August_2009 5] [http://2009.igem.org/Team:Stanford/NotebookPage/6_August_2009 6] [http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/7_August_2009&action=edit 7] [http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/8_August_2009&action=edit 8] [http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/9_August_2009&action=edit 9]
[http://2009.igem.org/Team:Stanford/NotebookPage/10_August_2009 10] [http://2009.igem.org/Team:Stanford/NotebookPage/11_August_2009 11] [http://2009.igem.org/Team:Stanford/NotebookPage/12_August_2009 12] [http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/13_August_2009&action=edit 13] [http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/14_August_2009&action=edit 14] [http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/15_August_2009&action=edit 15] [http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/16_August_2009&action=edit 16]
[http://2009.igem.org/Team:Stanford/NotebookPage/17_August_2009 17] [http://2009.igem.org/Team:Stanford/NotebookPage/18_August_2009 18] [http://2009.igem.org/Team:Stanford/NotebookPage/19_August_2009 19] [http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/20_August_2009&action=edit 20] [http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/21_August_2009&action=edit 21] [http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/22_August_2009&action=edit 22] [http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/23_August_2009&action=edit 23]
[http://2009.igem.org/Team:Stanford/NotebookPage/24_August_2009 24] [http://2009.igem.org/Team:Stanford/NotebookPage/25_August_2009 25] [http://2009.igem.org/Team:Stanford/NotebookPage/26_August_2009 26] [http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/27_August_2009&action=edit 27] [http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/28_August_2009&action=edit 28] [http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/29_August_2009&action=edit 29] [http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/30_August_2009&action=edit 30]
[http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/31_August_2009&action=edit 31]
September
MTWTFSS
  [http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/1_September_2009&action=edit 1] [http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/2_September_2009&action=edit 2] [http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/3_September_2009&action=edit 3] [http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/4_September_2009&action=edit 4] [http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/5_September_2009&action=edit 5] [http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/6_September_2009&action=edit 6]
[http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/7_September_2009&action=edit 7] [http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/8_September_2009&action=edit 8] [http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/9_September_2009&action=edit 9] [http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/10_September_2009&action=edit 10] [http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/11_September_2009&action=edit 11] [http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/12_September_2009&action=edit 12] [http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/13_September_2009&action=edit 13]
[http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/14_September_2009&action=edit 14] [http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/15_September_2009&action=edit 15] [http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/16_September_2009&action=edit 16] [http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/17_September_2009&action=edit 17] [http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/18_September_2009&action=edit 18] [http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/19_September_2009&action=edit 19] [http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/20_September_2009&action=edit 20]
[http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/21_September_2009&action=edit 21] [http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/22_September_2009&action=edit 22] [http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/23_September_2009&action=edit 23] [http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/24_September_2009&action=edit 24] [http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/25_September_2009&action=edit 25] [http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/26_September_2009&action=edit 26] [http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/27_September_2009&action=edit 27]
[http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/28_September_2009&action=edit 28] [http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/29_September_2009&action=edit 29] [http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/30_September_2009&action=edit 30]
October
MTWTFSS
      [http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/1_October_2009&action=edit 1] [http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/2_October_2009&action=edit 2] [http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/3_October_2009&action=edit 3] [http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/4_October_2009&action=edit 4]
[http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/5_October_2009&action=edit 5] [http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/6_October_2009&action=edit 6] [http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/7_October_2009&action=edit 7] [http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/8_October_2009&action=edit 8] [http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/9_October_2009&action=edit 9] [http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/10_October_2009&action=edit 10] [http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/11_October_2009&action=edit 11]
[http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/12_October_2009&action=edit 12] [http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/13_October_2009&action=edit 13] [http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/14_October_2009&action=edit 14] [http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/15_October_2009&action=edit 15] [http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/16_October_2009&action=edit 16] [http://2009.igem.org/Team:Stanford/NotebookPage/17_October_2009 17] [http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/18_October_2009&action=edit 18]
[http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/19_October_2009&action=edit 19] [http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/20_October_2009&action=edit 20] [http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/21_October_2009&action=edit 21] [http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/22_October_2009&action=edit 22] [http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/23_October_2009&action=edit 23] [http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/24_October_2009&action=edit 24] [http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/25_October_2009&action=edit 25]
[http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/26_October_2009&action=edit 26] [http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/27_October_2009&action=edit 27] [http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/28_October_2009&action=edit 28] [http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/29_October_2009&action=edit 29] [http://2009.igem.org/Team:Stanford/NotebookPage/30_October_2009 30] [http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/31_October_2009&action=edit 31]

Modeling Team Entries

  • We created a model for how BLH and RalDHII convert B-carotene into retinoic acid. We started a model that shows how IPP is converted into B-carotene. The model is extremely complicated because of all the intermediates and there are likely a lot of side reactions which we have still yet to consider. We also did quite a bit of work with further modeling and analyzing how IDO will ultimately affect levels of Trp operon activity. Essentially, the problem we see from the models is that IDO reacts much more quickly with Trp than 5MT, which is problematic. If we have a high initial concentration of 5MT so that the system would see a large fluctuation of 5MT compared to Trp, time it takes for 5MT levels to drop are on the time scale of thousands of seconds because IDO reacts so slowly with 5MT. On the other hand, if we use lower levels of 5MT, we run into the problem that the levels of Trp fluctuate much more greatly than levels of 5MT. So yeah, basically the model just continues to confirm our troubles with the Trp Operon.
  • For a more detailed look into our graphs and other stuff, Check out our PPT.
Retrieved from "http://2009.igem.org/Team:Stanford/NotebookPage/31_July_2009"