http://2009.igem.org/wiki/index.php?title=Team:TorontoMaRSDiscovery/Modeling&feed=atom&action=historyTeam:TorontoMaRSDiscovery/Modeling - Revision history2024-03-29T06:28:58ZRevision history for this page on the wikiMediaWiki 1.16.5http://2009.igem.org/wiki/index.php?title=Team:TorontoMaRSDiscovery/Modeling&diff=166648&oldid=prevShung at 02:52, 22 October 20092009-10-22T02:52:44Z<p></p>
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<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>!align="center"|[[Team:TorontoMaRSDiscovery/Parts|BioBricks]]</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>!align="center"|[[Team:TorontoMaRSDiscovery/Parts|BioBricks]]</div></td></tr>
<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div>!align="center"|[[Team:TorontoMaRSDiscovery/Modeling|<del class="diffchange diffchange-inline">Modeling</del>]]</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>!align="center"|[[Team:TorontoMaRSDiscovery/Modeling|<ins class="diffchange diffchange-inline">Modelling</ins>]]</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>!align="center"|[[Team:TorontoMaRSDiscovery/Bioinformatics|Bioinformatics]]</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>!align="center"|[[Team:TorontoMaRSDiscovery/Bioinformatics|Bioinformatics]]</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>!align="center"|[[Team:TorontoMaRSDiscovery/Safety|Safety]]</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>!align="center"|[[Team:TorontoMaRSDiscovery/Safety|Safety]]</div></td></tr>
</table>Shunghttp://2009.igem.org/wiki/index.php?title=Team:TorontoMaRSDiscovery/Modeling&diff=166632&oldid=prevShung at 02:52, 22 October 20092009-10-22T02:52:13Z<p></p>
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<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div>!align="center"|[[Team:TorontoMaRSDiscovery/<del class="diffchange diffchange-inline">Modelling</del>|Modeling]]</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>!align="center"|[[Team:TorontoMaRSDiscovery/<ins class="diffchange diffchange-inline">Modeling</ins>|Modeling]]</div></td></tr>
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<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>!align="center"|[[Team:TorontoMaRSDiscovery/Safety|Safety]]</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>!align="center"|[[Team:TorontoMaRSDiscovery/Safety|Safety]]</div></td></tr>
</table>Shunghttp://2009.igem.org/wiki/index.php?title=Team:TorontoMaRSDiscovery/Modeling&diff=166325&oldid=prevShung at 02:45, 22 October 20092009-10-22T02:45:46Z<p></p>
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<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div>!align="center"|[[Team:TorontoMaRSDiscovery/<del class="diffchange diffchange-inline">Modeling</del>|Modeling]]</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>!align="center"|[[Team:TorontoMaRSDiscovery/<ins class="diffchange diffchange-inline">Modelling</ins>|Modeling]]</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>!align="center"|[[Team:TorontoMaRSDiscovery/Bioinformatics|Bioinformatics]]</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>!align="center"|[[Team:TorontoMaRSDiscovery/Bioinformatics|Bioinformatics]]</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>!align="center"|[[Team:TorontoMaRSDiscovery/Safety|Safety]]</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>!align="center"|[[Team:TorontoMaRSDiscovery/Safety|Safety]]</div></td></tr>
</table>Shunghttp://2009.igem.org/wiki/index.php?title=Team:TorontoMaRSDiscovery/Modeling&diff=156887&oldid=prevShung: /* Model */2009-10-21T22:03:45Z<p><span class="autocomment">Model</span></p>
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<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>Our model is based on the following design (See [https://2009.igem.org/Team:TorontoMaRSDiscovery/Project Project Page] for a full description of this system).</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>Our model is based on the following design (See [https://2009.igem.org/Team:TorontoMaRSDiscovery/Project Project Page] for a full description of this system).</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr>
<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div>[[image:<del class="diffchange diffchange-inline">tmdt_biobrick</del>.png|center|600px|The Encapsulator]]</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>[[image:<ins class="diffchange diffchange-inline">tmdt_design2</ins>.png|center|600px|The Encapsulator]]</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>The reaction framework was mainly generated using the [http://synbioss.sourceforge.net/ SynBioSS Designer (a really useful modeling tool for iGEM teams)], which also provides default parameter values. These parameter values have been gathered from various literature [http://neptune.cems.umn.edu/designer/designer_defaults.pdf sources], and should be taken as approximations. All units were taken to be (1 / molarity^n-1 * s), where n is the order of the reaction. For example, for the reaction 2 lacI --> lacI2, n = 2, thus the rate constant has the units 1/molarity*s. </div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>The reaction framework was mainly generated using the [http://synbioss.sourceforge.net/ SynBioSS Designer (a really useful modeling tool for iGEM teams)], which also provides default parameter values. These parameter values have been gathered from various literature [http://neptune.cems.umn.edu/designer/designer_defaults.pdf sources], and should be taken as approximations. All units were taken to be (1 / molarity^n-1 * s), where n is the order of the reaction. For example, for the reaction 2 lacI --> lacI2, n = 2, thus the rate constant has the units 1/molarity*s. </div></td></tr>
</table>Shunghttp://2009.igem.org/wiki/index.php?title=Team:TorontoMaRSDiscovery/Modeling&diff=155754&oldid=prevFR at 21:27, 21 October 20092009-10-21T21:27:18Z<p></p>
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<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div><p style="font-size:18pt;">Modelling the <del class="diffchange diffchange-inline">assembly </del>of Encapsulin</p></div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><p style="font-size:18pt;">Modelling the <ins class="diffchange diffchange-inline">production </ins>of <ins class="diffchange diffchange-inline">eCFP, </ins>Encapsulin<ins class="diffchange diffchange-inline">, and Encapsulin microcompartments</ins></p></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>=Summary=</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>=Summary=</div></td></tr>
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</table>FRhttp://2009.igem.org/wiki/index.php?title=Team:TorontoMaRSDiscovery/Modeling&diff=151295&oldid=prevShung at 18:48, 21 October 20092009-10-21T18:48:20Z<p></p>
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<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>=Model=</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>=Model=</div></td></tr>
<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div>Our model is based on the following design (See Project Page for a full description of this system).</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>Our model is based on the following design (See <ins class="diffchange diffchange-inline">[https://2009.igem.org/Team:TorontoMaRSDiscovery/Project </ins>Project Page<ins class="diffchange diffchange-inline">] </ins>for a full description of this system).</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>[[image:tmdt_biobrick.png|center|600px|The Encapsulator]]</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>[[image:tmdt_biobrick.png|center|600px|The Encapsulator]]</div></td></tr>
</table>Shunghttp://2009.igem.org/wiki/index.php?title=Team:TorontoMaRSDiscovery/Modeling&diff=151253&oldid=prevShung at 18:46, 21 October 20092009-10-21T18:46:53Z<p></p>
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<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>Our model is based on the following design (See Project Page for a full description of this system).</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>Our model is based on the following design (See Project Page for a full description of this system).</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr>
<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div>[[image:tmdt_biobrick.png|<del class="diffchange diffchange-inline">frame</del>|<del class="diffchange diffchange-inline">x900px</del>|The Encapsulator]]</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>[[image:tmdt_biobrick.png|<ins class="diffchange diffchange-inline">center</ins>|<ins class="diffchange diffchange-inline">600px</ins>|The Encapsulator]]</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>The reaction framework was mainly generated using the [http://synbioss.sourceforge.net/ SynBioSS Designer (a really useful modeling tool for iGEM teams)], which also provides default parameter values. These parameter values have been gathered from various literature [http://neptune.cems.umn.edu/designer/designer_defaults.pdf sources], and should be taken as approximations. All units were taken to be (1 / molarity^n-1 * s), where n is the order of the reaction. For example, for the reaction 2 lacI --> lacI2, n = 2, thus the rate constant has the units 1/molarity*s. </div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>The reaction framework was mainly generated using the [http://synbioss.sourceforge.net/ SynBioSS Designer (a really useful modeling tool for iGEM teams)], which also provides default parameter values. These parameter values have been gathered from various literature [http://neptune.cems.umn.edu/designer/designer_defaults.pdf sources], and should be taken as approximations. All units were taken to be (1 / molarity^n-1 * s), where n is the order of the reaction. For example, for the reaction 2 lacI --> lacI2, n = 2, thus the rate constant has the units 1/molarity*s. </div></td></tr>
</table>Shunghttp://2009.igem.org/wiki/index.php?title=Team:TorontoMaRSDiscovery/Modeling&diff=151129&oldid=prevShung at 18:42, 21 October 20092009-10-21T18:42:31Z<p></p>
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<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>Our model is based on the following design (See Project Page for a full description of this system).</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>Our model is based on the following design (See Project Page for a full description of this system).</div></td></tr>
<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div>[[image:tmdt_biobrick.png|<del class="diffchange diffchange-inline">thumb</del>|<del class="diffchange diffchange-inline">centre</del>|The Encapsulator]]</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div> </div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>[[image:tmdt_biobrick.png|<ins class="diffchange diffchange-inline">frame</ins>|<ins class="diffchange diffchange-inline">x900px</ins>|The Encapsulator]]</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>The reaction framework was mainly generated using the [http://synbioss.sourceforge.net/ SynBioSS Designer (a really useful modeling tool for iGEM teams)], which also provides default parameter values. These parameter values have been gathered from various literature [http://neptune.cems.umn.edu/designer/designer_defaults.pdf sources], and should be taken as approximations. All units were taken to be (1 / molarity^n-1 * s), where n is the order of the reaction. For example, for the reaction 2 lacI --> lacI2, n = 2, thus the rate constant has the units 1/molarity*s. </div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>The reaction framework was mainly generated using the [http://synbioss.sourceforge.net/ SynBioSS Designer (a really useful modeling tool for iGEM teams)], which also provides default parameter values. These parameter values have been gathered from various literature [http://neptune.cems.umn.edu/designer/designer_defaults.pdf sources], and should be taken as approximations. All units were taken to be (1 / molarity^n-1 * s), where n is the order of the reaction. For example, for the reaction 2 lacI --> lacI2, n = 2, thus the rate constant has the units 1/molarity*s. </div></td></tr>
</table>Shunghttp://2009.igem.org/wiki/index.php?title=Team:TorontoMaRSDiscovery/Modeling&diff=151075&oldid=prevShung: /* Model */2009-10-21T18:40:32Z<p><span class="autocomment">Model</span></p>
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<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>Our model is based on the following design (See Project Page for a full description of this system).</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>Our model is based on the following design (See Project Page for a full description of this system).</div></td></tr>
<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div>[[image:<del class="diffchange diffchange-inline">BioBrick</del>.png|thumb|centre|The Encapsulator]]</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>[[image:<ins class="diffchange diffchange-inline">tmdt_biobrick</ins>.png|thumb|centre|The Encapsulator]]</div></td></tr>
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<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>The reaction framework was mainly generated using the [http://synbioss.sourceforge.net/ SynBioSS Designer (a really useful modeling tool for iGEM teams)], which also provides default parameter values. These parameter values have been gathered from various literature [http://neptune.cems.umn.edu/designer/designer_defaults.pdf sources], and should be taken as approximations. All units were taken to be (1 / molarity^n-1 * s), where n is the order of the reaction. For example, for the reaction 2 lacI --> lacI2, n = 2, thus the rate constant has the units 1/molarity*s. </div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>The reaction framework was mainly generated using the [http://synbioss.sourceforge.net/ SynBioSS Designer (a really useful modeling tool for iGEM teams)], which also provides default parameter values. These parameter values have been gathered from various literature [http://neptune.cems.umn.edu/designer/designer_defaults.pdf sources], and should be taken as approximations. All units were taken to be (1 / molarity^n-1 * s), where n is the order of the reaction. For example, for the reaction 2 lacI --> lacI2, n = 2, thus the rate constant has the units 1/molarity*s. </div></td></tr>
</table>Shunghttp://2009.igem.org/wiki/index.php?title=Team:TorontoMaRSDiscovery/Modeling&diff=150611&oldid=prevShung at 18:22, 21 October 20092009-10-21T18:22:02Z<p></p>
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