Team:USTC Software/Project

From 2009.igem.org

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:Do you want to enjoy more sunshine rather than fail and fail again in lab?  
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:*Do you want to enjoy more sunshine rather than fail and fail again in lab?
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:Do you want to design a biological system with computers rather than by thinking day and night?   
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:Do you want to have more reasonable plans rather than an uncertain one for your experiments?
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:*Do you want to design a biological system with computers rather than by thinking day and night?   
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:*Do you want to have more reasonable plans rather than an uncertain one for your experiments?
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:Follow [http://parts.mit.edu/igem07/index.php/USTC/DingBo Dr. Ding], our ABCD will try to make your dreams come true.
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:*Follow [https://2007.igem.org/USTC/DingBo Dr. Ding], our ABCD will try to make your dreams come true.
   
   
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:Wait!It would be much more efficient to get some general ideas about our ABCD firstly: [https://2009.igem.org/Team:USTC_Software/hoWMMD Mathematical Model], [https://2009.igem.org/Team:USTC_Software/hoWDesign Design Level], [https://2009.igem.org/Team:USTC_Software/hoWDesign Design Type].
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:*Wait!It would be much more efficient to get some general ideas about our ABCD firstly: [https://2009.igem.org/Team:USTC_Software/hoWMMD Mathematical Model], [https://2009.igem.org/Team:USTC_Software/hoWDesign#Design_Level Design Level], [https://2009.igem.org/Team:USTC_Software/hoWDesign#Design_Type_.28Sub_Level.29 Design Type].
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:Now, tell ABCD what you want. There are different ways for you to [https://2009.igem.org/Team:USTC_Software/hoWIO Input] your desired dynamics to ABCD.  
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:*Now, tell ABCD what you want. There are different ways for you to [https://2009.igem.org/Team:USTC_Software/hoWIO Input] your desired dynamics to ABCD.  
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:Are there any [https://2009.igem.org/Team:USTC_Software/hoWRestriction restrictions] on this biological network that happen to meet your needs? Good news! Dr. Ding will tell you how to complete this in ABCD.  
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:*Are there any [https://2009.igem.org/Team:USTC_Software/hoWRestriction restrictions] on this biological network that happen to meet your needs? Good news! Dr. Ding will tell you how to complete this in ABCD.  
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:Our ABCD engine starts working. The state of art [https://2009.igem.org/Team:USTC_Software/hoWAlgorithm algorithms] we implement in ABCD will make design process automatically and different feasible solutions will be generated.   
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:*Our ABCD engine starts working. The state of art [https://2009.igem.org/Team:USTC_Software/hoWAlgorithm algorithms] we implement in ABCD will make design process automatically and different feasible solutions will be generated.   
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:How can you find real components to construct the system. Thanks to [http://partsregistry.org/Main_Page BioBricks]. Our [https://2009.igem.org/Team:USTC_Software/hoWDatabase database] makes it possible to retrieve them while some new standards should be proposed.
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:*How can you find real components to construct the system. Thanks to [http://partsregistry.org/Main_Page BioBricks]. Our [https://2009.igem.org/Team:USTC_Software/hoWDatabase database] makes it possible to retrieve them while some new standards should be proposed.
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:Also, if our memory serves right, there are quite a few brilliant software packages specified at BioBrick organizing and related management, for example, [https://2008.igem.org/Team:UC_Berkeley_Tools Clotho] from Berkeley's dry team, 2008. If combined with these softwares, the construction will be even more applicable.
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:*Also, if our memory serves right, there are quite a few brilliant software packages specified at BioBrick organizing and related management, for example, [https://2008.igem.org/Team:UC_Berkeley_Tools Clotho] from Berkeley's dry team, 2008. If combined with these softwares, the construction will be even more applicable.
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:Now, you may feel happy to realize a function such as [https://2009.igem.org/Team:USTC_Software/WhatDemo#Example_1._Synthetic_Oscillator oscillation], [https://2009.igem.org/Team:USTC_Software/WhatDemo#Example_2:_Perfect_Adaptation perfect adaptation] or  [https://2009.igem.org/Team:USTC_Software/WhatDemo#Example_3._Bistable_Toggle_Switch bistability] following our solutions. But we still hold earnest expectations. Is it possible to complete the fabrication automatically in the [https://2009.igem.org/Team:USTC_Software/When future]?
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:*Now, you may feel happy to realize a function such as [https://2009.igem.org/Team:USTC_Software/WhatDemo#Example_1._Synthetic_Oscillator oscillation], [https://2009.igem.org/Team:USTC_Software/WhatDemo#Example_2:_Perfect_Adaptation perfect adaptation] or  [https://2009.igem.org/Team:USTC_Software/WhatDemo#Example_3._Bistable_Toggle_Switch bistability] following our solutions. But we still hold earnest expectations. Is it possible to complete the fabrication automatically in the [https://2009.igem.org/Team:USTC_Software/When future]?
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Latest revision as of 16:04, 21 October 2009


About Team and People Project Standard Notebook Demo Safety External Links


A First Introduction - Dr. Ding's One Summer

DBChe1.png

  • Do you want to enjoy more sunshine rather than fail and fail again in lab?
  • Do you want to design a biological system with computers rather than by thinking day and night?
  • Do you want to have more reasonable plans rather than an uncertain one for your experiments?

  • Follow Dr. Ding, our ABCD will try to make your dreams come true.
  • Now, tell ABCD what you want. There are different ways for you to Input your desired dynamics to ABCD.

DBChe2.png

DBChe3.png

  • Are there any restrictions on this biological network that happen to meet your needs? Good news! Dr. Ding will tell you how to complete this in ABCD.

  • Our ABCD engine starts working. The state of art algorithms we implement in ABCD will make design process automatically and different feasible solutions will be generated.

DBChe4.png

DBChe5.png

  • How can you find real components to construct the system. Thanks to [http://partsregistry.org/Main_Page BioBricks]. Our database makes it possible to retrieve them while some new standards should be proposed.
  • Also, if our memory serves right, there are quite a few brilliant software packages specified at BioBrick organizing and related management, for example, Clotho from Berkeley's dry team, 2008. If combined with these softwares, the construction will be even more applicable.

  • Now, you may feel happy to realize a function such as oscillation, perfect adaptation or bistability following our solutions. But we still hold earnest expectations. Is it possible to complete the fabrication automatically in the future?

DBChe6.png