Team:USTC Software/hoWRestriction

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List

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1. Node
2. Target Time Course
3. Input Data
4. Initial Values
5. Initial Parameters
6. Network Restriction
7. Parameter Restriction
8. Parameter Relation Restriction
9. Parameter Range
10. Candidate Function List
11. User Define Function
12. Algorithm Parameters


  • 1. Node: Lets you specify the numbers of species you need to construct a network
  • 2. Target Time Course Output: (1) simulation result (2) SBML (3) Robustness (4) reaction chart (5) biobrick information (sequence, ID, structure)
  • 3. Input Data: Lets you input desired dynamics of one or more species as time course
  • 4. Initial Values: Lets you specify the initial value of species
  • 5. Initial Parameters: Lets you specify the initial value of a parameter
  • 6. Network Restriction: Lets you cut unnecessary edges between species and restrict special rate term form of ceritain species
  • 7. Parameter Restriction: Lets you specify a parameter value that holds at all times during simulation, and is a function of other model component values in the model
  • 8. Parameter Relation Restriction: Lets you specify mathematical constraints on one or more parameters, species, or compartments that must hold during a simulation
  • 9. Parameter Range: Lets you specify the feasible range of parameters regardless of "6. PARAM_RESTRI"
  • 10. Candidate Function List: All possible types of functions following different kinetic laws (see Table.1)
  • 11. User Define Function: Lets users define any form of reaction term not constrained to one or two varaibles
  • 12. Algorithm Parameters: Lets you specify parameter values in genetic algorithm