LOCUS NC_009445 2175 bp DNA linear BCT 30-APR-2009 DEFINITION Bradyrhizobium sp. ORS278, complete genome. ACCESSION NC_009445 REGION: complement(1742399..1744573) VERSION NC_009445.1 GI:146337175 DBLINK Project:19575 KEYWORDS complete genome; PRO. SOURCE Bradyrhizobium sp. ORS278 ORGANISM Bradyrhizobium sp. ORS278 Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium. REFERENCE 1 (bases 1 to 2175) AUTHORS Giraud,E., Moulin,L., Vallenet,D., Barbe,V., Cytryn,E., Avarre,J.C., Jaubert,M., Simon,D., Cartieaux,F., Prin,Y., Bena,G., Hannibal,L., Fardoux,J., Kojadinovic,M., Vuillet,L., Lajus,A., Cruveiller,S., Rouy,Z., Mangenot,S., Segurens,B., Dossat,C., Franck,W.L., Chang,W.S., Saunders,E., Bruce,D., Richardson,P., Normand,P., Dreyfus,B., Pignol,D., Stacey,G., Emerich,D., Vermeglio,A., Medigue,C. and Sadowsky,M. TITLE Legumes symbioses: absence of Nod genes in photosynthetic bradyrhizobia JOURNAL Science 316 (5829), 1307-1312 (2007) PUBMED 17540897 REFERENCE 2 (bases 1 to 2175) AUTHORS Jaubert,M., Lavergne,J., Fardoux,J., Hannibal,L., Vuillet,L., Adriano,J.M., Bouyer,P., Pignol,D., Giraud,E. and Vermeglio,A. TITLE A singular bacteriophytochrome acquired by lateral gene transfer JOURNAL Unpublished REFERENCE 3 (bases 1 to 2175) AUTHORS Genoscope. CONSRTM 1:Genoscope, UMR 8030, France 2:LSTM, France 3:Dep SWC ; and BioTechnology Institute, USA 4:CEA/Cadarache,DEVM,UMR 6191, France 5:NCSB , USA 6:DOE , USA 7:DOE , USA 8:Universite Lyon1, France; UMR5557, France; IFR 41, France. TITLE Direct Submission JOURNAL Submitted (21-NOV-2006) Genoscope - Centre National de Sequencage : BP 191 91006 EVRY cedex - FRANCE (E-mail : seqref@genoscope.cns.fr - Web : www.genoscope.cns.fr) REFERENCE 4 (bases 1 to 2175) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (13-NOV-2004) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CU234118. Annotation data relative to BLAST similarities, COG assignations, enzymatic function prediction (PRIAM software), TMHMM and SignalP predictions, and synteny results (Syntonizer software) are available in FrankiaScope database via the MaGe annotation system http://www.genoscope.cns.fr/agc/mage/frankia. Each annotation includes a confidence level as follow: 1 : Function experimentally demonstrated in the studied organism 2a : Function of homologous gene experimentally demonstrated in an other organism 2b : Function of strongly homologous gene 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology 4 : Homologs of previously reported genes of unknown function 5 : No homology to any previously reported sequences 6 : Doubtful CDS 7 : Gene remnant. COMPLETENESS: full length. FEATURES Location/Qualifiers source 1..2175 /organism="Bradyrhizobium sp. ORS278" /mol_type="genomic DNA" /strain="ORS278" /db_xref="taxon:114615" gene 1..2175 /gene="BrbphP" /locus_tag="BRADO1628" /db_xref="GeneID:5118400" CDS 1..2175 /gene="BrbphP" /locus_tag="BRADO1628" /function="3.1.2.4.3 : Two-component regulatory systems (external signal)" /inference="ab initio prediction:AMIGene:2.0" /note="Evidence 1 : Function experimentally demonstrated in the studied organism; Product type r : regulator" /codon_start=1 /transl_table=11 /product="bacteriophytochrome" /protein_id="YP_001203744.1" /db_xref="GI:146338696" /db_xref="GeneID:5118400" /translation="MPVPLTTPAFGHATLANCEREQIHLAGSIQPHGILLAVKEPDNV VIQASINAAEFLNTNSVVGRPLRDLGGDLALQILPHLNGPLHLAPMTLRCTVGSPPRR VDCTVHRPSNGGLIVELEPATKTTNVAPALDGAFHRITSSSSLIGLCDETATIFREIT GYDRVMVYRFDEEGHGEVLSERRRPDLEAFLGNRYPASDIPQIARRLYERNRVRLLVD VNYTPVPLQPRISPLNGRDLDMSLSCLRSMSPIHQKYLQNMGVGATLVCSLMVSGRLW GLIACHHYEPRFVPFDIRAAGEALAETCAIRIAALESFAQSQSELVVRRLEQRLVEAV SRDGEWQAALFDGSQSLLQPLGASGAALLFEGQVMTAGDVPSTQRIRDLATWLDRRRK APDAPPQGLTVTASLTLDDPSFADIRSIASGLIAAPLSASEGEYLLWFRPEQVRTVTW GGDPLKAVIIGDDPSDLSPRRSFAQWHQLVEGKSEPWSPAELASARLVSETVADVALQ LRSVRMVIAQDQLATISAQVLRSEQPVIIADVEGRILLLNEAFEQQLRASHPHIPHLR DLGAYCTAPAEFRANLDDLMRNKRSWRGELTLTGGATPQRPLMVRADPVIAPHDRVLG FVLIFSDLTERKTAEAARARFQEEIDGARRPSLRLDQSASLIYKELAASTVENAQLAA LEVTHGAEAGSMPEMLESIRNSTARTLGILEHLVWYRSQSEE" ORIGIN 1 ttgcccgttc cgctgacgac gccagccttc ggccacgcta ctcttgcgaa ttgcgagcgc 61 gaacaaattc atctcgcagg ctcgattcag ccgcatggca ttctcctggc agtgaaggag 121 ccggacaatg tcgtcatcca ggccagcatc aatgcagccg agtttctcaa cacgaactcg 181 gtggtcgggc ggccgttgcg cgatctcggt ggcgatctgg cgctgcagat cctgccgcat 241 ctcaatggtc cgctgcatct ggcgccgatg accctgcgct gcaccgtcgg ctcgccgcca 301 cgccgggtgg attgcacggt ccatcgcccc tcgaatggcg gactgatcgt cgagttggag 361 ccggcgacca agaccaccaa cgtcgcgccc gcactcgacg gcgccttcca ccgcatcacc 421 tcgtcctcgt cgctcatcgg cctgtgcgac gagacggcga cgatcttccg ggagatcacc 481 ggctacgatc gcgtcatggt ctatcgcttc gacgaagaag ggcacggcga ggtgctgtcg 541 gagcggcggc ggccggacct cgaggccttc ctcggtaacc gctacccggc ctcggacatt 601 ccgcagatcg cgcggcggct ctatgagcgc aaccgcgtcc gcctgctcgt cgatgtcaac 661 tacacgccgg tgccactgca gccgcggata tccccgctca acggccgcga cctcgacatg 721 tccctgagtt gcctgcgcag catgtcgccg atccatcaga aatatctgca gaacatgggc 781 gtcggcgcga cgctggtgtg ctcgctgatg gtcagcggcc gtctctgggg cctgatcgcc 841 tgccaccatt acgagccgcg cttcgtgccg ttcgacatcc gcgccgccgg cgaggcgctg 901 gccgagacct gcgcgatccg catcgcggcg ctggagagct ttgcccagag ccagtcggag 961 ctggtggtgc gacggctgga gcagcggctg gtcgaggcgg tgtcgcgcga cggcgagtgg 1021 caggcggcct tgtttgatgg ctcgcaatcg ctgctgcagc cgctcggcgc cagcggcgcg 1081 gccctgctgt tcgagggcca ggtgatgacc gccggcgacg tgccgtcgac gcaacgcatc 1141 cgcgacctcg ccacctggct cgatcgacgc cgcaaggcgc cggacgcgcc gccgcagggc 1201 ctgacggtga cggcctcgct gacgctcgac gacccgtcct tcgccgacat ccgctcgatc 1261 gcctcgggcc tcatcgccgc gccgctgtcg gcgagcgagg gcgagtatct gttgtggttc 1321 cggccggagc aggtgcggac ggtgacctgg ggcggcgatc cgctcaaggc ggtcattatc 1381 ggcgacgatc cgtcggatct gtcgccgcgg cgctccttcg cgcaatggca tcagctcgtc 1441 gagggcaagt ccgagccgtg gtcgccggcg gagctcgcct ccgcgcggct ggtcagcgag 1501 accgtcgcgg atgtcgcgct gcagctgcgc tcagtgcgga tggtgattgc tcaggatcag 1561 ctcgcgacca tcagcgcgca ggtgctgcgc tcggaacaac cggtcatcat cgccgacgtc 1621 gagggccgga tcctgctgct gaacgaggcg ttcgagcagc agctgcgggc gtcgcatccg 1681 cacatcccgc acctgcgcga cctcggcgcc tattgcacgg cgcccgcgga gttccgcgcc 1741 aatctcgacg acctcatgcg caacaagcgc agctggcgcg gcgagctgac cttgaccggc 1801 ggcgccacac cgcagcggcc cctgatggtg cgcgccgatc cggtgatcgc accgcacgac 1861 cgcgtgctcg gcttcgtgct gatcttctca gatctcaccg agcgcaagac ggcagaggcc 1921 gcccgcgccc gtttccagga ggagatcgac ggcgcccgcc gcccaagcct gcggctcgat 1981 cagagcgcca gcctgatcta caaagaactc gccgcgtcga ccgtcgagaa cgcccagctc 2041 gccgcgctgg aagtgacgca cggagccgag gccggcagca tgccggaaat gctggagagc 2101 atccgcaatt caaccgcgcg gacgcttggg attctcgagc acctggtgtg gtatcgctcg 2161 cagagcgagg agtga //