LOCUS NC_009445 684 bp DNA linear BCT 30-APR-2009 DEFINITION Bradyrhizobium sp. ORS278, complete genome. ACCESSION NC_009445 REGION: 1739894..1740577 VERSION NC_009445.1 GI:146337175 DBLINK Project:19575 KEYWORDS complete genome; PRO. SOURCE Bradyrhizobium sp. ORS278 ORGANISM Bradyrhizobium sp. ORS278 Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium. REFERENCE 1 (bases 1 to 684) AUTHORS Giraud,E., Moulin,L., Vallenet,D., Barbe,V., Cytryn,E., Avarre,J.C., Jaubert,M., Simon,D., Cartieaux,F., Prin,Y., Bena,G., Hannibal,L., Fardoux,J., Kojadinovic,M., Vuillet,L., Lajus,A., Cruveiller,S., Rouy,Z., Mangenot,S., Segurens,B., Dossat,C., Franck,W.L., Chang,W.S., Saunders,E., Bruce,D., Richardson,P., Normand,P., Dreyfus,B., Pignol,D., Stacey,G., Emerich,D., Vermeglio,A., Medigue,C. and Sadowsky,M. TITLE Legumes symbioses: absence of Nod genes in photosynthetic bradyrhizobia JOURNAL Science 316 (5829), 1307-1312 (2007) PUBMED 17540897 REFERENCE 2 (bases 1 to 684) AUTHORS Jaubert,M., Lavergne,J., Fardoux,J., Hannibal,L., Vuillet,L., Adriano,J.M., Bouyer,P., Pignol,D., Giraud,E. and Vermeglio,A. TITLE A singular bacteriophytochrome acquired by lateral gene transfer JOURNAL Unpublished REFERENCE 3 (bases 1 to 684) AUTHORS Genoscope. CONSRTM 1:Genoscope, UMR 8030, France 2:LSTM, France 3:Dep SWC ; and BioTechnology Institute, USA 4:CEA/Cadarache,DEVM,UMR 6191, France 5:NCSB , USA 6:DOE , USA 7:DOE , USA 8:Universite Lyon1, France; UMR5557, France; IFR 41, France. TITLE Direct Submission JOURNAL Submitted (21-NOV-2006) Genoscope - Centre National de Sequencage : BP 191 91006 EVRY cedex - FRANCE (E-mail : seqref@genoscope.cns.fr - Web : www.genoscope.cns.fr) REFERENCE 4 (bases 1 to 684) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (13-NOV-2004) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CU234118. Annotation data relative to BLAST similarities, COG assignations, enzymatic function prediction (PRIAM software), TMHMM and SignalP predictions, and synteny results (Syntonizer software) are available in FrankiaScope database via the MaGe annotation system http://www.genoscope.cns.fr/agc/mage/frankia. Each annotation includes a confidence level as follow: 1 : Function experimentally demonstrated in the studied organism 2a : Function of homologous gene experimentally demonstrated in an other organism 2b : Function of strongly homologous gene 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology 4 : Homologs of previously reported genes of unknown function 5 : No homology to any previously reported sequences 6 : Doubtful CDS 7 : Gene remnant. COMPLETENESS: full length. FEATURES Location/Qualifiers source 1..684 /organism="Bradyrhizobium sp. ORS278" /mol_type="genomic DNA" /strain="ORS278" /db_xref="taxon:114615" gene 1..684 /gene="hmuO" /locus_tag="BRADO1626" /db_xref="GeneID:5116934" CDS 1..684 /gene="hmuO" /locus_tag="BRADO1626" /EC_number="1.14.99.3" /inference="ab initio prediction:AMIGene:2.0" /note="Evidence 1 : Function experimentally demonstrated in the studied organism; Product type e : enzyme" /codon_start=1 /transl_table=11 /product="heme oxygenase" /protein_id="YP_001203742.1" /db_xref="GI:146338694" /db_xref="GeneID:5116934" /translation="MLDRVDSNHVETAGRTTRPAGLLEAMRERTKTLHVTAERTGVVA ELLRGRGTVRAYALLLRNLLPVYEALEAELVRHQASPVVGLTVRPELHRCPAIKADLA ALDASDLPLLPEAIAYVRAIQEAGSGSGHPLLAHAYTRYLGDLSGGQIIKKILARSLE LQPEALSFYEFPAITDIPRFKTEYREALEQAGSAMTEHDSVVEEAATAFQLNITLSQA LQSAAGLGR" ORIGIN 1 atgttggacc gagttgattc caatcacgtc gaaacggccg ggcgcaccac gcgtccggcc 61 ggtcttttgg aagccatgcg cgagcggacc aagacgctgc acgtgacggc ggagcggacc 121 ggcgtcgtcg ccgagctgtt gcgcggccgc ggcacggtgc gcgcctatgc gctgctgctg 181 cgcaatctgc tgccggtcta tgaggcgctc gaagcggagc tcgttcgtca tcaggcgtca 241 ccggtggtcg gactgacggt gcggccggag ctgcatcggt gtccagcgat caaggccgat 301 ctcgccgcgc tcgacgcgag cgatctgccg ttgctgcccg aggccatcgc ctatgttcgc 361 gccatccagg aggcgggatc cggctccggt catccgctgc tggcgcacgc ctatacacgc 421 tatctcggtg atctcagcgg cggccagatc atcaagaaga tcctcgcccg ctcgctcgaa 481 ctgcagcccg aggcgctgtc gttctacgag tttccggcga tcaccgacat tccgcgcttc 541 aagaccgagt accgcgaggc gctggagcag gccggctcgg cgatgacaga gcatgactcc 601 gtcgtcgagg aagcggccac ggctttccag ctgaacatca cgctgtcgca ggcgctgcag 661 tcggccgcgg ggctcggccg ctga //