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Team:HKU-HKBU/Polar Expression Design
From 2009.igem.org
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*'''AIDA system''' | *'''AIDA system''' | ||
| - | In the plasmid pET-SP-GFP-Streptavidin-AIDA, '''pET''' is a promoter which needs T7 polymerase to promote its function; '''Signal peptide'''(SP) can bring the plasmid to the membrane region of the bacteria; '''GFP''' is integrated within the plasmid for detection; '''Streptavidin''' is specifically binding with biotin, which | + | In the plasmid pET-SP-GFP-Streptavidin-AIDA, '''pET''' is a promoter which needs T7 polymerase to promote its function; '''Signal peptide'''(SP) can bring the plasmid to the membrane region of the bacteria; '''GFP''' is integrated within the plasmid for detection; '''Streptavidin''' is specifically binding with biotin, which can achieve the combination of the bacteria and biotin coated motor; '''AIDA''' is a transmembrane protein, which leads to the polar expression of the whole plasmid. However, AIDA protein can only be expressed in a LPS complete strain, which is a constraint when choosing the bacteria strains. |
*'''Lpp-OmpA system''' | *'''Lpp-OmpA system''' | ||
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The plasmid we used is Lpp-OmpA-GFP-streptavidin, which can be polarly expressed on one side of rod-shaped bacteria. '''Lpp''' functions as a signal peptide; '''OmpA''' is the player which can achieve the surface expression of specific proteins; '''GFP-Strp''' acts the same role as above. | The plasmid we used is Lpp-OmpA-GFP-streptavidin, which can be polarly expressed on one side of rod-shaped bacteria. '''Lpp''' functions as a signal peptide; '''OmpA''' is the player which can achieve the surface expression of specific proteins; '''GFP-Strp''' acts the same role as above. | ||
| - | After we successfully constructed two polar expression systems, which bacteria strain to be used | + | After we successfully constructed two polar expression systems, which bacteria strain to be used became our crutial task. |
=='''Strain Selection'''== | =='''Strain Selection'''== | ||
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To achieve polar expression, it is essential to screen and select bacteria species and strains equipped with outstanding swimming abilities as well as a complete LPS (lipopolysaccharide) layer. This layer, present in the bacterial cell wall, is required for polar expression of certain proteins(AIDI) The candidates included ''Escherichia. Coli'' strains: ''BL21, NCM3722, MG1655, MG3,'' and ''YBE01'' , and ''YBS01''. | To achieve polar expression, it is essential to screen and select bacteria species and strains equipped with outstanding swimming abilities as well as a complete LPS (lipopolysaccharide) layer. This layer, present in the bacterial cell wall, is required for polar expression of certain proteins(AIDI) The candidates included ''Escherichia. Coli'' strains: ''BL21, NCM3722, MG1655, MG3,'' and ''YBE01'' , and ''YBS01''. | ||
| - | *'''For Lpp-OmpA system''' | + | *'''For Lpp-OmpA system''' |
| - | Lpp-OmpA system can only achieve outer membrane surface expression. To select the strain which can polar express this plasmid, Lpp-OmpA | + | Lpp-OmpA system can only achieve outer membrane surface expression. To select the strain which can polar express this plasmid, Lpp-OmpA-GFP-Streptavidin was transformed into the strains above. GFP equipped this plasmid the ability to be detected easily under fluorescent microscope. |
{{Team:HKU-HKBU/footer}} | {{Team:HKU-HKBU/footer}} | ||
Revision as of 13:02, 19 October 2009
Design
To achieve the interaction between bacteria and micromotors (bactomotor), polar expression of the protein streptavidin at one end of the bacteria is crucial in our project. When polar expression streptavidin bacteria encounter the biotin coated motor, their specific combination and bacteria mobility can generate propulsion force to the Bactomotor. The biggest advantage of our Bactomotor is that the expression of streptavidin is specifically at the forehead of the bacteria, which allows cells to adhere in the same orientation to the motor. Therefore, this synthetic device is capable to convert biological energy into mechanical work.
Two polar expression systems could express proteins not only at poles, but also particularly on the outer membrane of the bacteria. This surface expression characteristics could ensure the precise structures and functions of the expressed protein streptavidin, which could lead to strong interaction between streptavidin and biotin. The construction of these two plasmids were as follows:
- AIDA system
In the plasmid pET-SP-GFP-Streptavidin-AIDA, pET is a promoter which needs T7 polymerase to promote its function; Signal peptide(SP) can bring the plasmid to the membrane region of the bacteria; GFP is integrated within the plasmid for detection; Streptavidin is specifically binding with biotin, which can achieve the combination of the bacteria and biotin coated motor; AIDA is a transmembrane protein, which leads to the polar expression of the whole plasmid. However, AIDA protein can only be expressed in a LPS complete strain, which is a constraint when choosing the bacteria strains.
- Lpp-OmpA system
The plasmid we used is Lpp-OmpA-GFP-streptavidin, which can be polarly expressed on one side of rod-shaped bacteria. Lpp functions as a signal peptide; OmpA is the player which can achieve the surface expression of specific proteins; GFP-Strp acts the same role as above.
After we successfully constructed two polar expression systems, which bacteria strain to be used became our crutial task.
Strain Selection
- For AIDA system
To achieve polar expression, it is essential to screen and select bacteria species and strains equipped with outstanding swimming abilities as well as a complete LPS (lipopolysaccharide) layer. This layer, present in the bacterial cell wall, is required for polar expression of certain proteins(AIDI) The candidates included Escherichia. Coli strains: BL21, NCM3722, MG1655, MG3, and YBE01 , and YBS01.
- For Lpp-OmpA system
Lpp-OmpA system can only achieve outer membrane surface expression. To select the strain which can polar express this plasmid, Lpp-OmpA-GFP-Streptavidin was transformed into the strains above. GFP equipped this plasmid the ability to be detected easily under fluorescent microscope.
