Team:UNIPV-Pavia/Software

From 2009.igem.org

(Difference between revisions)
m
m
Line 33: Line 33:
It’s a Matlab graphics interface that allows you to align the results of the sequencing procedures with expected sequences, built up assembling simple parts (BioBricks) according to the rules of Standard Assembly (modality of use Compare Sequence/BioBrick).
It’s a Matlab graphics interface that allows you to align the results of the sequencing procedures with expected sequences, built up assembling simple parts (BioBricks) according to the rules of Standard Assembly (modality of use Compare Sequence/BioBrick).
It offers also the possibility of simply align two sequences (modality of use Compare
It offers also the possibility of simply align two sequences (modality of use Compare
-
two Sequences ).
+
two Sequences).
SequenceAlignment executable files for Windows platforms and the relative [http://aimed11.unipv.it/SequenceAlignment/example.pdf User's Guide] can be downloaded free of charge for non-profit institutions from the following web site:
SequenceAlignment executable files for Windows platforms and the relative [http://aimed11.unipv.it/SequenceAlignment/example.pdf User's Guide] can be downloaded free of charge for non-profit institutions from the following web site:

Revision as of 15:28, 19 October 2009

EthanolPVanimation.gif



SequenceAlignment


We developed this tool to speed up the quality control of the assembled BioBricks. It’s a Matlab graphics interface that allows you to align the results of the sequencing procedures with expected sequences, built up assembling simple parts (BioBricks) according to the rules of Standard Assembly (modality of use Compare Sequence/BioBrick). It offers also the possibility of simply align two sequences (modality of use Compare two Sequences).

SequenceAlignment executable files for Windows platforms and the relative [http://aimed11.unipv.it/SequenceAlignment/example.pdf User's Guide] can be downloaded free of charge for non-profit institutions from the following web site: [http://aimed11.unipv.it/SequenceAlignment Download Sequence Alignment].


Modality of use Compare Sequence/BioBrick


Modality of use Compare two Sequences


Modality of use Compare Sequence/BioBrick at work


An example of Report (modality of use Compare Sequence/BioBrick)