Team:Alberta/DNAanchor
From 2009.igem.org
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<h1>DNA Anchor/Terminator</h1> | <h1>DNA Anchor/Terminator</h1> | ||
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<h3>Brick Creation</h3> | <h3>Brick Creation</h3> | ||
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<img src="https://static.igem.org/mediawiki/2009/e/e0/UofA09_Bead_Overview_anchor2.png"> | <img src="https://static.igem.org/mediawiki/2009/e/e0/UofA09_Bead_Overview_anchor2.png"> | ||
- | <p><B>Figure 1</B>: | + | <p><B>Figure 1</B>: Showing anchor and terminator fragments and effect of USER<sup>TM</sup> treatment. I SceI site and A ends are highlighted<p> |
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<h3>Anchoring System</h3> | <h3>Anchoring System</h3> | ||
- | <p>The new and improved method for Byte production (ie: USER<sup>TM</sup>) necessitated a change in anchoring system. Longer sticky ends were also desired to increase the efficiency of recircularization. These factors led to the development of a USER<sup>TM</sup>-based anchoring system. An anchoring piece, constructed of two annealed oligomers, is bound to the streptavidin-coated bead via a 5' biotin modification and provides a sticky 3' overhang complementary to an A end. Once the desired number of Bytes is added, a terminator (again, two annealed oligomers) is annealed and ligated to the available end of the final brick (in this case, a B end). The entire construct is then treated with USER<sup>TM</sup> enzyme mix. The resulting end product from the digestion of uracil contained within the anchor, anneals to the terminator overhang and can be ligated to form a circular product. The ligation also yields a complete SceI site that can be used to linearize the construct for recombination into the <i>E. coli</i> genome. See <B>Figure | + | <p>The new and improved method for Byte production (ie: USER<sup>TM</sup>) necessitated a change in anchoring system. Longer sticky ends were also desired to increase the efficiency of recircularization. These factors led to the development of a USER<sup>TM</sup>-based anchoring system. An anchoring piece, constructed of two annealed oligomers, is bound to the streptavidin-coated bead via a 5' biotin modification and provides a sticky 3' overhang complementary to an A end. Once the desired number of Bytes is added, a terminator (again, two annealed oligomers) is annealed and ligated to the available end of the final brick (in this case, a B end). The entire construct is then treated with USER<sup>TM</sup> enzyme mix. The resulting end product from the digestion of uracil contained within the anchor, anneals to the terminator overhang and can be ligated to form a circular product. The ligation also yields a complete SceI site that can be used to linearize the construct for recombination into the <i>E. coli</i> genome. See <B>Figure 1</B>.</P> |
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- | <img src="https://static.igem.org/mediawiki/2009/ | + | <img src="https://static.igem.org/mediawiki/2009/e/e0/UofA09_Bead_Overview_anchor2.png"> |
- | <p><B>Figure | + | <p><B>Figure 1:</B> pAB and pBA multiple cloning sites with highlighted primers prA1/B1u and prA2/B2u annealing regions.<p> |
</center> | </center> | ||
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Revision as of 03:52, 21 October 2009
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DNA Anchor/TerminatorAnchoring SystemThe new and improved method for Byte production (ie: USERTM) necessitated a change in anchoring system. Longer sticky ends were also desired to increase the efficiency of recircularization. These factors led to the development of a USERTM-based anchoring system. An anchoring piece, constructed of two annealed oligomers, is bound to the streptavidin-coated bead via a 5' biotin modification and provides a sticky 3' overhang complementary to an A end. Once the desired number of Bytes is added, a terminator (again, two annealed oligomers) is annealed and ligated to the available end of the final brick (in this case, a B end). The entire construct is then treated with USERTM enzyme mix. The resulting end product from the digestion of uracil contained within the anchor, anneals to the terminator overhang and can be ligated to form a circular product. The ligation also yields a complete SceI site that can be used to linearize the construct for recombination into the E. coli genome. See Figure 1. Figure 1: pAB and pBA multiple cloning sites with highlighted primers prA1/B1u and prA2/B2u annealing regions.
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