Team:UC Davis/Contacts References

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Contacts/References:

References:

1. Ze-Chun Yuan, Pu Liu, Panatda Saenkham, Kathleen Kerr, and Eugene W. Nester (2007). Transcriptome Profiling and Fuctional Analysis of Agrobacterium tumefaciens Reveals a General Conserved Response to Acidic Conditions (pH 5.5) and a Complex Acid-Mediated Signaling Involved in Agrobacterium-Plant Interactions. Journal of Bacteriology. Jan. 208, p. 494-507.

2.Luoping Li, Yonghui Jia, Qingming Hou, Trevor C. Charles, Eugene W. Nester, and Shen Q. Pan. (2002). A global pH sensor: Agrobacterium sensor protein ChvG regulates acid-inducible genes on its two chromosomes and Ti plasmid. PNAS. (99)19.12369-12374

3. Nicholas J. Mantis and Stephen C. Winans. (1993), The Chromosomal Response Regulatory Gene chvI of Agrobacterium tumefaciens Complements an Escherichia coli
phoB Mutation and Is Required for Virulence. J. Microbiology. Oct. 1993, p.6626-6636.

4. Trevor C. Charles and Eugene W. Nester. (1993). A Chromosomally Encoded Two-Component Sensory Transduction System Is Required for Virulence of Agrobacterium tumefaciens. J. Bacteriology. Oct. 1993, p. 6614-6625.

5.Jeffrey M. Skerker, Barrett S. Perchuk, Albert Siryaporn, Emma A. Lubin, Orr Ashenberg, Mark Goulian and Michael T. Laub. (2008). Rewiring the Specificity of Two-Component Signal Transduction Systems.

6.Takashi Aoyama, Mituru Takanami, Kozo Makino, and Atsuhiro Oka. (1991). Cross-talk between the virulence and phosphate regulons of Agrobacterium tumefaciens caused by an unusual interaction of the transcriptional activator with a regulatory DNA element. Mol. Gen. Genet. (1991) 227, p. 385-390.

7. Edwin van Bloois. Remko T. Winter. Dick B. Janssen, Marco W. Fraaije. 2009, Export of functional Streptomyces coelicolor alditol oxidase to the periplasm or cell surface of Escherichia coli and its application in whole-cell biocatalysis. (2009). Appl. Microbiol. Biotechnol. 83. p. 679-687.

8.Dariusz Stepniak, Liesbeth Spaenij-Dekking, Cristina Mitea, Martine Moester, Arnoud de Ru, Renee Baak-Pablo, Peter van Veelen, Luppo Edens and Frits Koning. (2006). Highly efficient gluten degradation with a newly identifies prolyl endoprotease: implications for celiac disease. Am J Physiol Gastrointest Liver Physiol. 291: G621-G629, 2006.

9. Heung-Chae Junge, Joon-Hyun Park, Seung-Hwan Park, Jean-Michel Lebeault, and Jae-Gu Pan. (1998). Expression of carboxymethylcellulase on the Surface of Escerichia coli using Pseudomonas syringae ice nucleation protein. Enzyme and Microbial Technology. 22: 348-354, 1998.

10. Michael Klose, Anja Störiko, York-Dieter Stierhof, Ingrid Hindennach, Bettina Mutschler, and Ulf Henning. (1993). Membrane Assembly of the Outer Membrane Protein OmpA of Escherichia coli. Journal of Biological Chemistry. (268) 34, pp. 25664-25670.

11.The Celiac Site. (2009). http://digestive.niddk.nih.gov/ddiseases/pubs/celiac/

12.Jonathan Gass, Michael T. Bethune, Matthew Siegel, Andrew Spencer, and Chaitan Khosla. (2007). Combination Enzyme Therapy for Gastric Digestion of Dietary Gluten in Patients With Celiac Sprue. Gastroenterology. 2007; 133: 472-480.

13.Roland Freud, Michael Klose, and Ulf Henning. (1989). Export and Sorting of the Escherichia coli Outer Membrane Protein OmpA. Journal of Bioenergetics and Biomembranes. 22 (3). pp.441-449.

14.National Digestive Diseases Information Clearinghouse (NDDIC). September 2008. http://digestive.niddk.nih.gov/ddiseases/pubs/celiac/

15. Se Whan Park, Moon Gyu Chung, Hwa Young Lee, Jeong Yoon Kim, and Young Ha Rhee. (2008). Stable expression and secretion of the polyhydroxybutyrate depolymerase of Paucimonas lemoignei in Escherichia coli. J. Microbiology. 46(6). pp. 662-669.

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 <big><big>
-</big></big><small></small>
+</big></big>
-<hr style="width: 100%; height: 2px;"><small></small>
+<hr style="width: 100%; height: 2px;">
 <div style="text-align: center;"><small><u
 style="font-weight: bold; font-style: italic;"><span
@@ Line 59: / Line 59: @@
 style="font-family: Helvetica,Arial,sans-serif;">References:</small></span></u><b><u><span
 style="font-size: 24pt; font-family: &quot;Showcard Gothic&quot;;"><o:p></o:p></span></u></b></small></div>
-<small></small></div>
+</div>
 <div style="text-align: left;"><small> </small></div>
 <div style="text-align: left;"><small> </small></div>
@@ Line 65: / Line 65: @@
 <div style="text-align: left;"><small> </small></div>
 <p style="color: rgb(0, 0, 0); text-align: left;" class="MsoNormal"><small><span
-style="font-size: 12pt; font-family: &quot;Times New Roman&quot;,&quot;serif&quot;;">1.<b>
+style="font-size: 12pt; font-family: &quot;Times New Roman&quot;,&quot;serif&quot;;"><span
+style="font-weight: bold;">1.</span><b>
 Ze-Chun Yuan, Pu Liu, Panatda
-Saenkham, Kathleen Kerr, and Eugene W. Nester.</b>2007, Transcriptome
+Saenkham, Kathleen Kerr, and Eugene W. Nester (</b>2007). Transcriptome
 Profiling
-and Fuctional Analysis of Agrobacterium tumefaciens Reveals a General
+and Fuctional Analysis of <span style="font-style: italic;">Agrobacterium
+tumefaciens</span> Reveals a General
 Conserved
-Respomse to Acidic Conditions (pH 5.5) and a Complex Acid-Mediated
+Response to Acidic Conditions (pH 5.5) and a Complex Acid-Mediated
 Signaling
-Involved in Agrobacterium-Plant Interactions.<br>
+Involved in <span style="font-style: italic;">Agrobacterium</span>-Plant
-<b>.Luoping Li, Yonghui Jia, Qingming Hou, Trevor C. Charles, Eugene
+Interactions. <span style="text-decoration: underline;">Journal of
+Bacteriology.</span> Jan. 208, p. 494-507.<br>
+</span></small></p>
+<p style="color: rgb(0, 0, 0); text-align: left;" class="MsoNormal"><small><span
+style="font-size: 12pt; font-family: &quot;Times New Roman&quot;,&quot;serif&quot;;"><span
+style="font-weight: bold;">2</span><b>.Luoping Li, Yonghui Jia,
+Qingming Hou, Trevor C. Charles, Eugene
 W.
-Nester, and Shen Q. Pan. </b>2002,A global pH sensor: Agrobacterium
+Nester, and Shen Q. Pan. (</b>2002). A global pH sensor: Agrobacterium
 sensor
 protein ChvG regulates acid-inducible genes on its two chromosomes and
 Ti
-plasmid.<br>
+plasmid. <span style="text-decoration: underline;">PNAS</span>.
-.<b> <small><big>Nicholas J. Mantis and Stephen C. Winans.</big></small></b>1993,
+(99)19.12369-12374<br>
+</span></small></p>
+<p style="color: rgb(0, 0, 0); text-align: left;" class="MsoNormal"><small><span
+style="font-size: 12pt; font-family: &quot;Times New Roman&quot;,&quot;serif&quot;;"><span
+style="font-weight: bold;">3.</span><b><span style="font-weight: bold;">
+</span><small><big>Nicholas J. Mantis and Stephen C. Winans.</big></small></b>
+(1993),
 The
 Chromosomal
-Response Regulatory Gene chvI of Agrobacterium tumefaciens Complements
+Response Regulatory Gene <span style="font-style: italic;">chvI</span>
+of <span style="font-style: italic;">Agrobacterium tumefaciens </span>Complements
 an
-Escherichia coli<br>
+<span style="font-style: italic;">Escherichia coli</span><br>
-phoB Mutation and Is Required for Virulence.<br>
+<span style="font-style: italic;">phoB</span> Mutation and Is Required
-.<b> Trevor C. Charles and Eugene W. Nester.</b>1993<b>,</b>A
+for Virulence. <span style="text-decoration: underline;">J.
+Microbiology.</span> Oct. 1993, p.6626-6636.<br>
+</span></small></p>
+<p style="color: rgb(0, 0, 0); text-align: left;" class="MsoNormal"><small><span
+style="font-size: 12pt; font-family: &quot;Times New Roman&quot;,&quot;serif&quot;;"><span
+style="font-weight: bold;">4.</span><b> Trevor C. Charles and Eugene
+W. Nester.</b> (1993)<span style="font-weight: bold;">.</span> A
 Chromosomally
 Encoded Two-Component Sensory Transduction System Is Required for
 Virulence of
-Agrobacterium tumefaciens.<br>
+<span style="font-style: italic;">Agrobacterium tumefaciens. </span><span
-.<b>Jeffrey M. Skerker, Barrett S. Perchuk, Albert Siryaporn, Emma A.
+style="text-decoration: underline;">J. Bacteriology</span>. Oct. 1993,
+p. 6614-6625.<br>
+</span></small></p>
+<p style="color: rgb(0, 0, 0); text-align: left;" class="MsoNormal"><small><span
+style="font-size: 12pt; font-family: &quot;Times New Roman&quot;,&quot;serif&quot;;">5.<b>Jeffrey
+M. Skerker, Barrett S. Perchuk, Albert Siryaporn, Emma A.
 Lubin,
-Orr Ashenberg, Mark Goulian and Michael T. Laub.2008,</b>Rewiring the
+Orr Ashenberg, Mark Goulian and Michael T. Laub. (2008). </b>Rewiring
-Specificity of Two-Component Signal Transduction Systems<o:p></o:p></span><br>
+the
-<span style="font-size: 13.5pt; font-family: &quot;Times New Roman&quot;,&quot;serif&quot;;">6.</span><b><span
+Specificity of Two-Component Signal Transduction Systems. <o:p></o:p></span><br>
+<span style="font-size: 13.5pt; font-family: &quot;Times New Roman&quot;,&quot;serif&quot;;"><br>
+<span style="font-weight: bold;">6</span>.</span><b><span
 style="font-size: 12pt; font-family: &quot;Times New Roman&quot;,&quot;serif&quot;;">Takashi
-Aoyama, Mituru Takanami,Kozo Makino, and Atsuhiro
+Aoyama, Mituru Takanami, Kozo Makino, and Atsuhiro
 Oka</span></b><b><span
-style="font-size: 13.5pt; font-family: &quot;Times New Roman&quot;,&quot;serif&quot;;">.</span></b><span
+style="font-size: 13.5pt; font-family: &quot;Times New Roman&quot;,&quot;serif&quot;;">. </span></b><span
-style="font-size: 12pt; font-family: &quot;Times New Roman&quot;,&quot;serif&quot;;">1991</span><span
+style="font-size: 13.5pt; font-family: &quot;Times New Roman&quot;,&quot;serif&quot;;">(</span><span
-style="font-size: 13.5pt; font-family: &quot;Times New Roman&quot;,&quot;serif&quot;;">,</span><span
+style="font-size: 12pt; font-family: &quot;Times New Roman&quot;,&quot;serif&quot;;">1991)</span><span
+style="font-size: 13.5pt; font-family: &quot;Times New Roman&quot;,&quot;serif&quot;;">. </span><span
 style="font-size: 12pt; font-family: &quot;Times New Roman&quot;,&quot;serif&quot;;">Cross-talk
 between the virulence and
-phosphate regulons of Agrobacterium tumefaciens caused by an unusual
+phosphate regulons of <span style="font-style: italic;">Agrobacterium
+tumefaciens </span>caused by an unusual
 interaction of the transcriptional activator with a regulatory DNA
-element.</span><span
+element. <span style="text-decoration: underline;">Mol. Gen. Genet</span>.
+(1991) 227, p. 385-390.</span><span
 style="font-size: 18pt; font-family: &quot;Times New Roman&quot;,&quot;serif&quot;;"><o:p></o:p></span><br>
 <span
-style="font-size: 12pt; line-height: 115%; font-family: &quot;Times New Roman&quot;,&quot;serif&quot;;">7.<b>
+style="font-size: 12pt; line-height: 115%; font-family: &quot;Times New Roman&quot;,&quot;serif&quot;;"><br>
+<span style="font-weight: bold;">7.</span><b>
 Edwin van Bloois. Remko T. Winter. Dick B. Janssen, Marco W. Fraaije.
 </b>,
@@ Line 118: / Line 150: @@
 periplasm or cell surface of <i>Escherichia coli</i> and its
 application in
-whole-cell biocatalysis<o:p></o:p><br>
+whole-cell biocatalysis. (2009). <span
-.<b>Dariusz
+style="text-decoration: underline;">Appl. Microbiol. Biotechnol</span>.
+. p. 679-687.<o:p></o:p><br>
+</span></small></p>
+<p style="color: rgb(0, 0, 0); text-align: left;" class="MsoNormal"><small><span
+style="font-size: 12pt; line-height: 115%; font-family: &quot;Times New Roman&quot;,&quot;serif&quot;;"><span
+style="font-weight: bold;">8</span>.<b>Dariusz
 Stepniak, Liesbeth Spaenij-Dekking, Cristina Mitea, Martine
-Moester,Arnoud de
+Moester, Arnoud de
-Ru, Renee Baak-Pablo, Peter van Veelen, Luppo Edens and Frits Koning.</b>(2006),
+Ru, Renee Baak-Pablo, Peter van Veelen, Luppo Edens and Frits Koning. </b>(2006).
 Highly efficient gluten degradation with a newly identifies prolyl
 endoprotease:
-implications for celiac disease<o:p></o:p></span><br>
+implications for celiac disease. <span
+style="text-decoration: underline;">Am J Physiol Gastrointest Liver
+Physiol</span>. 291: G621-G629, 2006.<o:p></o:p></span><br>
 <b><span
-style="font-size: 12pt; line-height: 115%; font-family: &quot;Times New Roman&quot;,&quot;serif&quot;;">9.Heung-Chae
+style="font-size: 12pt; line-height: 115%; font-family: &quot;Times New Roman&quot;,&quot;serif&quot;;"><br>
+. Heung-Chae
 Junge, Joon-Hyun Park, Seung-Hwan Park, Jean-Michel Lebeault, and
 Jae-Gu Pan</span></b><span
-style="font-size: 12pt; line-height: 115%; font-family: &quot;Times New Roman&quot;,&quot;serif&quot;;">.(1998),Expression
+style="font-size: 12pt; line-height: 115%; font-family: &quot;Times New Roman&quot;,&quot;serif&quot;;">.
+(1998). Expression
 of carboxymethylcellulase
-on the Surface of Escerichia coli using Pseudomonas syringae ice
+on the Surface of <span style="font-style: italic;">Escerichia coli</span>
+using <span style="font-style: italic;">Pseudomonas syringae</span>
+ice
 nucleation
-protein<br>
+protein. <span style="text-decoration: underline;">Enzyme and
-.<b> Michael Klose, Anja St&ouml;riko, York-Dieter Stierhof, Ingrid
+Microbial Technology</span>. 22: 348-354, 1998.<br>
+</span></small></p>
+<p style="color: rgb(0, 0, 0); text-align: left;" class="MsoNormal"><small><span
+style="font-size: 12pt; line-height: 115%; font-family: &quot;Times New Roman&quot;,&quot;serif&quot;;"><span
+style="font-weight: bold;">10.</span><b> Michael Klose, Anja
+St&ouml;riko, York-Dieter Stierhof, Ingrid
 Hindennach,
-Bettina Mutschler, and Ulf Henning</b> .(1993), Membrane Assembly of
+Bettina Mutschler, and Ulf Henning</b>. (1993). Membrane Assembly of
 the Outer
-Membrane Protein OmpA of Escherichia coli<br>
+Membrane Protein OmpA of <span style="font-style: italic;">Escherichia
-.<b>The Celiac Site</b>.2009,
+coli. </span><span style="text-decoration: underline;">Journal of
+Biological Chemistry.</span> (268) 34, pp. 25664-25670.<br>
+</span></small></p>
+<p style="color: rgb(0, 0, 0); text-align: left;" class="MsoNormal"><small><span
+style="font-size: 12pt; line-height: 115%; font-family: &quot;Times New Roman&quot;,&quot;serif&quot;;"><span
+style="font-weight: bold;">11.</span><b>The Celiac Site</b>. (2009).
 http://digestive.niddk.nih.gov/ddiseases/pubs/celiac/<br>
-.<b>Jonathan Gass, Michael T. Bethune, Matthew Siegel, Andrew
+</span></small></p>
+<p style="color: rgb(0, 0, 0); text-align: left;" class="MsoNormal"><small><span
+style="font-size: 12pt; line-height: 115%; font-family: &quot;Times New Roman&quot;,&quot;serif&quot;;"><span
+style="font-weight: bold;">12.</span><b>Jonathan Gass, Michael T.
+Bethune, Matthew Siegel, Andrew
 Spencer, and
-Chaitan Khosla</b>.2007,Combination Enzyme Therapy for Gastric
+Chaitan Khosla</b>. (2007). Combination Enzyme Therapy for Gastric
 Digestion of
-Dietary Gluten in Patients With Celiac Sprue<br>
+Dietary Gluten in Patients With Celiac Sprue. <span
-.<b>Roland Freud, Michael Klose, and Ulf Henning.(</b>1989), Export
+style="text-decoration: underline;">Gastroenterology</span>. 2007;
+: 472-480.<br>
+</span></small></p>
+<p style="color: rgb(0, 0, 0); text-align: left;" class="MsoNormal"><small><span
+style="font-size: 12pt; line-height: 115%; font-family: &quot;Times New Roman&quot;,&quot;serif&quot;;"><span
+style="font-weight: bold;">13.</span><b>Roland Freud, Michael Klose,
+and Ulf Henning.</b> (1989). Export
 and
-Sorting of the Escherichia coli Outer Membrane Protein OmpA<br>
+Sorting of the Escherichia coli Outer Membrane Protein OmpA. <span
-.<b>National Digestive Diseases Information Clearinghouse(NDDIC)</b>.September
+style="text-decoration: underline;">Journal of Bioenergetics and
-, http://digestive.niddk.nih.gov/ddiseases/pubs/celiac/<br style="">
+Biomembranes</span>. 22 (3). pp.441-449.<br>
+</span></small></p>
+<p style="color: rgb(0, 0, 0); text-align: left;" class="MsoNormal"><small><span
+style="font-size: 12pt; line-height: 115%; font-family: &quot;Times New Roman&quot;,&quot;serif&quot;;"><span
+style="font-weight: bold;">14.</span><b>National Digestive Diseases
+Information Clearinghouse (NDDIC)</b>. September
+. http://digestive.niddk.nih.gov/ddiseases/pubs/celiac/<br>
+</span></small></p>
+<p style="color: rgb(0, 0, 0); text-align: left;" class="MsoNormal"><small><span
+style="font-size: 12pt; line-height: 115%; font-family: &quot;Times New Roman&quot;,&quot;serif&quot;;"><span
+style="font-weight: bold;">15. </span></span><small><font
+face="Times New Roman" size="5"><small><small><b>Se Whan Park, Moon
+Gyu Chung, Hwa Young Lee, Jeong Yoon Kim, and Young Ha Rhee. </b>
+(2008). Stable expression and secretion of the polyhydroxybutyrate
+depolymerase of <i>Paucimonas lemoignei </i>in <i>Escherichia
+coli.&nbsp; </i>
+<u>J. Microbiology.</u> 46(6). pp. 662-669.&nbsp;&nbsp; </small></small></font></small></small><small><span
+style="font-size: 12pt; line-height: 115%; font-family: &quot;Times New Roman&quot;,&quot;serif&quot;;"><span
+style="font-weight: bold;"></span><br style="">
 </span></small></p>
 <hr style="width: 100%; height: 2px;">
-<p style="color: rgb(0, 0, 0); text-align: center;" class="MsoNormal"><small><span
+<p style="color: rgb(0, 0, 0); text-align: left;" class="MsoNormal"><small><span
 style="font-size: 12pt; line-height: 115%; font-family: &quot;Times New Roman&quot;,&quot;serif&quot;;"></span></small><small><b><u><span
 style="font-size: 22pt; line-height: 115%; font-family: &quot;Times New Roman&quot;,&quot;serif&quot;;"><small
-style="font-style: italic; font-family: Helvetica,Arial,sans-serif;">Additional
+style="font-style: italic; font-family: Helvetica,Arial,sans-serif;"></small></span></u></b></small><span
-Resources:</small><o:p></o:p></span></u></b><br>
+style="font-size: 12pt; line-height: 115%; font-family: &quot;Times New Roman&quot;,&quot;serif&quot;; color: rgb(0, 0, 0);"><br
-</small></p>
+style="">
-<div style="text-align: left;"><small> </small></div>
-<div style="text-align: left;"><small> </small></div>
-<div style="text-align: left;"><small> </small></div>
-<div style="text-align: left;"><small> </small></div>
-<p style="color: rgb(0, 0, 0); text-align: left;" class="MsoNormal"><small><span
-style="font-size: 12pt; line-height: 115%; font-family: &quot;Times New Roman&quot;,&quot;serif&quot;;">1.<b>
-Matthew J. Armstrong, Gerry G. Robins and Peter D. Howdle</b>.(2009),
-Recent
-advances in coelic disease<br>
-. <b>Chia-Hwa Chang and Stephen C. Winans</b>.1996,Resection and
-mutagenesis
-of the acid pH-inducible P2 promoter of the Agrobacterium tumefaciens
-virG
-gene.<br>
-.<b>Wei Xin, Soo-Young Wanda, Yuhua Li, Shifeng Wang, Hua
-Mo, and Roy
-Curtiss</b>. 2008, Analysis of Type second secretion of Recombinant
-Pnuemococcal
-PspA and PspC in a Salmonella enterica Serovar Typhimurium Vaccine with
-Regulated
-Delayed Antigen Synthesis.<o:p></o:p><br>
-.<b>H.
-Sletta, A. T&oslash;ndervik,S. Hakv&aring;g,T. E. Vee Aune, A. Nedal,R.
-Aune,G. Evensen, S.
-Valla,T. E. Ellingsen, and T. Brautaset.</b> 2006,The Presence of
-N-Terminal
-Secretion Signal Sequences Leads to Strong Stimulation of the Total
-Expression
-Levels of Three Tested Medically Important Proteins during
-High-Cell-Density
-Cultivations of <i>Escherichia coli<br>
-</i>5<b>.Yong-Chul&nbsp;Jung,Yunrong&nbsp;Gu, Donghai&nbsp;Wu and
-Shouguang&nbsp;Jin.</b>2004,
-Mutants of Agrobacterium tumefaciens virG Gene That Activate
-Transcription of
-vir Prometer in Escherichia coli.<br>
-.<b>Stephen C. Winans</b>.1990,Transcriptional Induction of an
-Agrobacterium
-Regulatory Gene at Tandem Promoters by Plant-Released Phenolic
-Compounds,
-Phosphate Stravation, and Acidic Growth Media<br style="">
-<!--[if !supportLineBreakNewLine]--></span>7.<b><span
-style="font-size: 12pt; line-height: 115%; font-family: &quot;Times New Roman&quot;,&quot;serif&quot;;">
-Xu,X. Q. &amp; Pan, S. Q. </span></b><span
-style="font-size: 12pt; line-height: 115%; font-family: &quot;Times New Roman&quot;,&quot;serif&quot;;">(2000),An
-Agrobacterium Catalase is a virulence factor involved in tumorigenesis<o:p></o:p></span></small><span
-style="font-size: 12pt; line-height: 115%; font-family: &quot;Times New Roman&quot;,&quot;serif&quot;; color: rgb(0, 0, 0);"><small>8.<big><b>
-Y. H. Jia, L.P. Li, Q. M. Hou, Shen
-Q. Pan</b>.(2001),An
-Agrobacterium gene involved in tumorigenesis encodes an outer membrane
-protein
-exposed on the bacterial cell surface<br>
-</big></small><br style="">
 </span></p>
 <span style="color: rgb(255, 255, 0);"> </span></div>
 </body>
 </html>