Team:NCTU Formosa/Project/Introduction

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<li><a href="https://2009.igem.org/Team:NCTU_Formosa/Team" target="_self"><b>Team</b></a>
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    <li><a><b>Team</b></a>
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<li><a href="https://2009.igem.org/Team:NCTU_Formosa/Team" target="_self">Team</a></li>
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                <li><a href="http://life.nctu.edu.tw/~cptlab/Picasa%20HTML%20Exports/2009_iGEM-NCTU_Formosa/20091013.html" target="_blank">Gallery</a></li>
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            <li><a href="https://2009.igem.org/Team:NCTU_Formosa/Project/Abstract" target="_self">Abstract</a></li>
<li><a href="https://2009.igem.org/Team:NCTU_Formosa/Project/Introduction" target="_self">Introduction</a></li>
<li><a href="https://2009.igem.org/Team:NCTU_Formosa/Project/Introduction" target="_self">Introduction</a></li>
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<li><a href="https://2009.igem.org/Team:NCTU_Formosa/Project/Components" target="_self">Components</a></li>
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<li><a href="https://2009.igem.org/Team:NCTU_Formosa/Project/Design" target="_self">Design</a></li>
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<li><a href="https://2009.igem.org/Team:NCTU_Formosa/Project/Construction" target="_self">Construction</a></li>
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                <li><a href="https://2009.igem.org/Team:NCTU_Formosa/Project/Project_new" target="_self">New Idea</a></li>
<li><a href="https://2009.igem.org/Team:NCTU_Formosa/Project/Safety" target="_self">Safety</a></li>
<li><a href="https://2009.igem.org/Team:NCTU_Formosa/Project/Safety" target="_self">Safety</a></li>
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<li><a href="https://2009.igem.org/Team:NCTU_Formosa/WetLab/Labworks" target="_self">Lab works</a></li>
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<li><a href="https://2009.igem.org/Team:NCTU_Formosa/Notebook/Traveling" target="_self">Traveling</a></li>
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                <li><a href="https://2009.igem.org/Team:NCTU_Formosa/WetLab/Timer" target="_self">Timer</a></li>
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                <li><a href="https://2009.igem.org/Team:NCTU_Formosa/WetLab/Counter" target="_self">Counter</a></li>
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  <div id="intitle"> <h2>Introduction</h2> </div>
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     <span style="font-size:1.4em">Bacterial referee with the adjustable timer and counter functions</span>
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    <br>
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         <p>Our team constructed a controllable synthetic genetic circuit in <b><i>Escherichia coli</i> which has timer and counter functions</b>The circuit works as an OR gate to integrate temporal and environmental signals.</p>
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     <span style="font-size:1.4em">Motive</span>
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         <p>The output (red fluorescent protein: RFP) of the OR gate is ON when one of the input signals is ONThe timer function is controlled by Lac promoter, and the concentration of lactose determines timer’s working length. After <i>E.coli</i> consume the added lactose, the RFP will be translated to remind us that time’s up.</p>  
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        <br>
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         <p>The counter function can detect the bacteria population with LuxI/LuxR device; Moreover, the counter sensitivity is controlled by the strength of TetR repressible promoter. If external bacteria invade the system, the extra AHL produced by them will induce the RFP translation to warn us the contaminationOur project can be applied to storage warning signs of fresh food, contact lens, and wound dressing.</p>
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        <br>
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         <p>Fresh food displayed in preservation storage in supermarkets often lack definite assurance of its freshness, so we think it’s necessary to examine whether the foods are undergoing bacterial contamination or not. Although the importance of controlling food quality is well known, it’s hard to design an economical mechanism which could calculate the population of the bacteria contaminating the food. What’s more, could determine an actual expiration date depending on the circumstances of the food at the moment rather than presuming one.</p>
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  </div>
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<p>To overcome this problem, we want to <strong>design a genetic circuit in <i>E. coli</i>, and to serve it as both counter and timer.</strong> The constructed <i>E.coli</i> works as a referee and uses fluorescent proteins with different colors to reflect the state of food. The green fluorescence means that the referee system is turned on and the environment is free of bacterial contamination, whereas yellow means the system is beginning to lose its freshness, and red warns us that there is bacterial contamination or that the food in storage has expired. When the red light appears, the food in storage become unedible!</p>
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    <a href="https://2009.igem.org/Image:Referee-equation.png" ><img src="https://static.igem.org/mediawiki/2009/1/10/Referee-equation.png" border="0"></a>
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        <span style="font-size:1.4em">Application</span>
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        <br>
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         <p>The device we designed contains the functions of Timer and Bacterial Detection; It can mainly be applied in:
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        <ol><li>Food preservation</li><li>Contact lenses</li><li>Trauma dressings</li></ol>
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        </p>
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        <p>The roughly applications are as follow animation: </p>
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    <p>1. Food Preservation <br> We break up the inner package and release the lactose, which starts the circuit.  The bacteria will soon translate the GFP protein and then appear green color.  Few hours later, RFP protein will be produced and warn us of the bacterial contamination or the expiration of the foodsAt the same time, the bacteria will suicide because of the ccdB protein.
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If the system is contaminated during the working, the same output will appear and will lead to the same result as above.</p>
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<p>2. Contact Lenses <br> Just like the food preservation, we can put the package with lactose into the contact lenses.  The timer function can remind us that we have worn too long and must take a rest.  If the bacteria invaded, the circuit will secrete the RFP protein.  The whole contact lenses will become red and warn us of the bacterial contamination.</p>  
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         <p>3. Wound dressings <br> As the application above, our project can also contribute on the wound dressing. It can remind us to renew the ointment, or warn us of the bacterial contamination. </p>
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        <br>
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        <p>Extended applications: More functions to our bacteria .
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        <ol>
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            <li>In addition to the food preservation, we can also make the circuit secrete some material so as to protect from the invaded bacteria. </li>
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            <li>The circuit can use to defend our eyes against invaded bacteriaIt can also eliminate the excessive protein secreted from our eyes. </li>
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            <li>It can be applied to the wound dressing that to secrete antibiotics or other substances to fight against the invaded bacteria.  It can even aid healing.</li>
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            </ol>
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        <p>
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        <p>In short, we want to create a much more convenient or much easier way to reflect the bacterial contamination or to fight against the invaded bacteria.  Referee fulfills the goal in an obvious and succinct way.  We wish that the project in application can promote the living standard of human beings.</p>
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{| style="color:#1b2c8a;background-color:#0c6;" cellpadding="3" cellspacing="1" border="1" bordercolor="#fff" width="62%" align="center"
 
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!align="center"|[[Team:NCTU Formosa|Home]]
 
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!align="center"|[[Team:NCTU Formosa/Team|The Team]]
 
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!align="center"|[[Team:NCTU Formosa/Project|The Project]]
 
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!align="center"|[[Team:NCTU Formosa/Parts|Parts Submitted to the Registry]]
 
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!align="center"|[[Team:NCTU Formosa/Modelling|Modelling]]
 
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==Notebook==
 
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You should make use of the calendar feature on the wiki and start a lab notebook.  This may be looked at by the judges to see how your work progressed throughout the summer.  It is a very useful organizational tool as well. 
 
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Find more information on how to use the calendar feature by going to the [[Help:Calendar | general calendar page]].
 

Latest revision as of 17:43, 21 October 2009

Introduction


Motive

Fresh food displayed in preservation storage in supermarkets often lack definite assurance of its freshness, so we think it’s necessary to examine whether the foods are undergoing bacterial contamination or not. Although the importance of controlling food quality is well known, it’s hard to design an economical mechanism which could calculate the population of the bacteria contaminating the food. What’s more, could determine an actual expiration date depending on the circumstances of the food at the moment rather than presuming one.

To overcome this problem, we want to design a genetic circuit in E. coli, and to serve it as both counter and timer. The constructed E.coli works as a referee and uses fluorescent proteins with different colors to reflect the state of food. The green fluorescence means that the referee system is turned on and the environment is free of bacterial contamination, whereas yellow means the system is beginning to lose its freshness, and red warns us that there is bacterial contamination or that the food in storage has expired. When the red light appears, the food in storage become unedible!









Application

The device we designed contains the functions of Timer and Bacterial Detection; It can mainly be applied in:

  1. Food preservation
  2. Contact lenses
  3. Trauma dressings

The roughly applications are as follow animation:

1. Food Preservation
We break up the inner package and release the lactose, which starts the circuit. The bacteria will soon translate the GFP protein and then appear green color. Few hours later, RFP protein will be produced and warn us of the bacterial contamination or the expiration of the foods. At the same time, the bacteria will suicide because of the ccdB protein. If the system is contaminated during the working, the same output will appear and will lead to the same result as above.

2. Contact Lenses
Just like the food preservation, we can put the package with lactose into the contact lenses. The timer function can remind us that we have worn too long and must take a rest. If the bacteria invaded, the circuit will secrete the RFP protein. The whole contact lenses will become red and warn us of the bacterial contamination.

3. Wound dressings
As the application above, our project can also contribute on the wound dressing. It can remind us to renew the ointment, or warn us of the bacterial contamination.


Extended applications: More functions to our bacteria .

  1. In addition to the food preservation, we can also make the circuit secrete some material so as to protect from the invaded bacteria.
  2. The circuit can use to defend our eyes against invaded bacteria. It can also eliminate the excessive protein secreted from our eyes.
  3. It can be applied to the wound dressing that to secrete antibiotics or other substances to fight against the invaded bacteria. It can even aid healing.

In short, we want to create a much more convenient or much easier way to reflect the bacterial contamination or to fight against the invaded bacteria. Referee fulfills the goal in an obvious and succinct way. We wish that the project in application can promote the living standard of human beings.