Team:Todai-Tokyo/Team

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<!--Or you can choose different headings.  But you must have a team page, a project page, and a notebook page.'')-->
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=='''TEAM MEMBERS''' ==
=='''TEAM MEMBERS''' ==
-
 
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'''Instructors'''
 
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*Craig Hamilton
 
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*Daichi Daichi Tamaru
 
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*Yoshihiro Shimizu
 
-
 
-
 
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'''Advisor:'''
 
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*Yutaro Kii
 
'''Undergraduates:'''
'''Undergraduates:'''
members and their majors
members and their majors
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*Marina Komatsu :science and engineering
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*Marina Komatsu :engineering, electronics, and bioscience
*Chie Umatani :zoology
*Chie Umatani :zoology
-
*Sun Xiaosong :engineering
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*Xiaosong Sun :engineering
*Koji Tanaka :engineering, chemistry, and biology
*Koji Tanaka :engineering, chemistry, and biology
*Takaki Yamamoto :engineering, chemistry, and biology
*Takaki Yamamoto :engineering, chemistry, and biology
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*Yushi Suzuki :engineering, chemistry, and biology
*Yushi Suzuki :engineering, chemistry, and biology
*Yoko Tomizawa :chemical biology
*Yoko Tomizawa :chemical biology
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*Masashi Salvador :engineering
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*Masashi Salvador : mathematical engineering
*Mariko Matsuura :engineering, physics, and biology
*Mariko Matsuura :engineering, physics, and biology
*Akiko Nishimura :chemical biology
*Akiko Nishimura :chemical biology
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*Komura Takuya :bioinformatics
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*Takuya Komura:bioinformatics
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<gallery>
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Image:Marina_Komatsu.jpg|Marina Komatsu
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Image:Chie_Umatani.png|Chie Umatani
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Image:Sun_Xiaosong.jpg|Xiaosong Sun
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Image:Koji_Tanaka.jpg|Koji Tanaka
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Image:Takaki_Yamamoto.jpg|Takaki Yamamoto
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Image:Hiroyuki_Yamazaki.jpg|Hiroyuki Yamazaki
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Image:Hiroki.jpg|Hiroki Kawai
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Image:Xin_Yin.jpg|Xin Yin
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Image:Yushi_Suzuki.jpg|Yushi Suzuki
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Image:Yoko_Tomizawa.jpg|Yoko Tomizawa
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Image:Masashi_Salvador.jpg|Masashi Salvador
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Image:Mariko_Matsuura.jpg|Mariko Matsuura
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Image:Akiko_Nishimura.jpg|Akiko Nishimura
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Image:Komura_Takuya.jpg|Takuya Komura
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</gallery>
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'''Advisors:'''
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*Craig Hamilton
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*Daichi Tamaru
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*Yutaro Kii
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*'''Student 1''':    Sleepyhead
 
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*'''Student 2''':    Math nerd
 
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<gallery>
<gallery>
Image:@taichung.jpg|Craig Hamilton
Image:@taichung.jpg|Craig Hamilton
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Image:Koji_Tanaka.png|Koji Tanaka
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Image:Daiti_Tamaru.jpg|Daichi Tamaru
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Image:Chie_Umatani.png|Chie Umatani
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Image:Yutaro_Kii.jpg|Yutaro Kii
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Image:Yoko_Tomizawa.jpg|Yoko Tomizawa
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</gallery>
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'''Instructors'''
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*Takuya Ueda
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*Yoshihiro Shimizu
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<gallery>
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Image:Takuya Ueda.jpg|Takuya Ueda
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Image:Yoshihiro Shimizu.jpg|Yoshihiro Shimizu
</gallery>
</gallery>
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[[Image:Example.jpg]]
 
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[[Image:Example.jpg]]
 
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== '''UNIVERSITY''' ==
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== '''CONTRIBUTIONS''' ==
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The university of tokyo, Japan
 
 +
We started our project last October. It started from learning what is synthetic biology visiting laboratories of our interests during the first few months. Each member had his/her own interests, and we decided to work on four projects (It turned out to be very tough, as we had too much to do and it was almost impossible for each member to fully catch up with the all projects).
 +
The rough plan was settled on July and we started our experiments. The laboratory was a little far from our home, we had a trip of one hour and a half before getting there.
-
== '''CONTACT''' ==
+
The school was over at the beginning of August, the longed summer vacation started. At first, it was numerous mistakes and failures. Since most of the team members were beginners, we didn't know how to do PCR! Also, it was very difficult to communicate since we worked in shifts. Although we shared notebook, at first we didn't know what information is important. The most difficult thing for us was sequencing and we made mistake again and again, the experiment didn't proceed due to the lack of the sequencing data. Through series of trial and error, we learned what to write on the notebook, how to do our experiment most effectively, how to use the laboratory machines. We gradually learned to succeed in each experiments.
-
Please send email to our advisor, Craig Hamilton to the following address
+
But alas! The summer vacation was now over, and school started once again in October. Our projects had still long way to go. Members went to the lab after the classes over, and worked through night.  
-
+
-
c.hamilton3 AT gmail DOT com
+
 +
DAITI TAMARU was our excellent adviser of all the projects. Our plan would not ever have been settled without his advices.
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{| style="color:#1b2c8a;background-color:#0c6;" cellpadding="3" cellspacing="1" border="1" bordercolor="#fff" width="62%" align="center"
+
CRAIG HAMILTON advised us how to present our projects on wiki. He helped us to submit the forms in English.
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!align="center"|[[Team:Todai-Tokyo|Home]]
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-
!align="center"|[[Team:Todai-Tokyo/Team|The Team]]
+
 
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!align="center"|[[Team:Todai-Tokyo/Project|The Project]]
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YUTARO KII found sponsors of our projects.
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!align="center"|[[Team:Todai-Tokyo/Parts|Parts Submitted to the Registry]]
+
 
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!align="center"|[[Team:Todai-Tokyo/Modeling|Modeling]]
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!align="center"|[[Team:Todai-Tokyo/Notebook|Notebook]]
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'''LDLR'''<BR>
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|}
+
Our best of the best of the best leader CHIE UMATANI was rich in experience in biological experiment, and make protocols of iGEM experiments, told us experimental tips in order not to make mistakes and to successfully complete the experiments. She also understood well about each projects and made overall plan.
 +
 
 +
 
 +
HIROKI KAWAI stayed in the lab for many days, and did the experiments though night. As we were running short of time, it was of great help.
 +
 
 +
 
 +
YUSHI SUZUKI wrote our project abstract without sleeping for two days.
 +
 
 +
 
 +
HIROYUKI YAMAZAKI's careful experiments was our breakthrough to PCR LDLR gene.
 +
 
 +
 
 +
TAKAKI YAMAMOTO's success in the DNA sequencing of many parts promoted us to go on to the next experimental steps.
 +
 
 +
 
 +
'''TABACCO'''<BR>
 +
KOJI TANAKA, the director of tobacco projects, also worked on ethical problems.
 +
 
 +
 
 +
'''BREAD'''<BR>
 +
AKIKO NISHIMURA and TAKUYA KOMURA planed the bread projects .
 +
 
 +
 
 +
'''BIOCLOCK'''<BR>
 +
MASASHI SALVADOR made our wiki format.
 +
 
 +
 
 +
XIN YIN wrote a complicated program for Bioclock project modeling.
 +
 
 +
 
 +
XIASONG SUN came to the lab when others couldn't during the examination.
 +
 
 +
 
 +
MARINA KOMATSU made a presentation at a meeting of synthetic biology.
 +
 
 +
 
 +
'''AND ALL THE MEMBERS CONTRIBUTED TO THE EXPERIMENTS AND MAKING WIKI. OUR PROJECT WOULD NEVER BE LIKE IT IS WITHOUT ANY OF YOU. WE HAD A GREAT IGEM YEAR TOGETHER! THANK YOU ALL VERY MUCH!'''
 +
 
 +
 
 +
 
 +
''wrote by YOKO TOMIZAWA of Bioclock project''
 +
 
 +
 
 +
''And YOKO TOMIZAWA planned the Bioclock project, who we all appreciate very much.''
 +
<BR>
 +
<BR>
 +
 
 +
== '''UNIVERSITY''' ==
 +
 
 +
The University of Tokyo, Japan
 +
 
 +
== '''CONTACT''' ==
 +
 
 +
Please send email to our advisor, Craig Hamilton to the following address
 +
 +
c.hamilton3 AT gmail DOT com

Latest revision as of 02:25, 22 October 2009

UT.png
Home The Team The Project Parts Submitted to the Registry Modeling Notebook Protocols Ethics



the notebook



Contents

TEAM MEMBERS

Undergraduates: members and their majors

  • Marina Komatsu :engineering, electronics, and bioscience
  • Chie Umatani :zoology
  • Xiaosong Sun :engineering
  • Koji Tanaka :engineering, chemistry, and biology
  • Takaki Yamamoto :engineering, chemistry, and biology
  • Hiroyuki Yamazaki :engineering, chemistry, and biology
  • Hiroki Kawai :engineering, chemistry, and biology
  • Xin Yin :engineering
  • Yushi Suzuki :engineering, chemistry, and biology
  • Yoko Tomizawa :chemical biology
  • Masashi Salvador : mathematical engineering
  • Mariko Matsuura :engineering, physics, and biology
  • Akiko Nishimura :chemical biology
  • Takuya Komura:bioinformatics

Marina Komatsu

Chie Umatani

Xiaosong Sun

Koji Tanaka

Takaki Yamamoto

Hiroyuki Yamazaki

Hiroki Kawai

Xin Yin

Yushi Suzuki

Yoko Tomizawa

Masashi Salvador

Mariko Matsuura

Akiko Nishimura

Takuya Komura


Advisors:

  • Craig Hamilton
  • Daichi Tamaru
  • Yutaro Kii


Craig Hamilton

Daichi Tamaru

Yutaro Kii


Instructors

  • Takuya Ueda
  • Yoshihiro Shimizu

Takuya Ueda

Yoshihiro Shimizu


CONTRIBUTIONS

We started our project last October. It started from learning what is synthetic biology visiting laboratories of our interests during the first few months. Each member had his/her own interests, and we decided to work on four projects (It turned out to be very tough, as we had too much to do and it was almost impossible for each member to fully catch up with the all projects).

The rough plan was settled on July and we started our experiments. The laboratory was a little far from our home, we had a trip of one hour and a half before getting there.

The school was over at the beginning of August, the longed summer vacation started. At first, it was numerous mistakes and failures. Since most of the team members were beginners, we didn't know how to do PCR! Also, it was very difficult to communicate since we worked in shifts. Although we shared notebook, at first we didn't know what information is important. The most difficult thing for us was sequencing and we made mistake again and again, the experiment didn't proceed due to the lack of the sequencing data. Through series of trial and error, we learned what to write on the notebook, how to do our experiment most effectively, how to use the laboratory machines. We gradually learned to succeed in each experiments.

But alas! The summer vacation was now over, and school started once again in October. Our projects had still long way to go. Members went to the lab after the classes over, and worked through night.


DAITI TAMARU was our excellent adviser of all the projects. Our plan would not ever have been settled without his advices.


CRAIG HAMILTON advised us how to present our projects on wiki. He helped us to submit the forms in English.


YUTARO KII found sponsors of our projects.


LDLR
Our best of the best of the best leader CHIE UMATANI was rich in experience in biological experiment, and make protocols of iGEM experiments, told us experimental tips in order not to make mistakes and to successfully complete the experiments. She also understood well about each projects and made overall plan.


HIROKI KAWAI stayed in the lab for many days, and did the experiments though night. As we were running short of time, it was of great help.


YUSHI SUZUKI wrote our project abstract without sleeping for two days.


HIROYUKI YAMAZAKI's careful experiments was our breakthrough to PCR LDLR gene.


TAKAKI YAMAMOTO's success in the DNA sequencing of many parts promoted us to go on to the next experimental steps.


TABACCO
KOJI TANAKA, the director of tobacco projects, also worked on ethical problems.


BREAD
AKIKO NISHIMURA and TAKUYA KOMURA planed the bread projects .


BIOCLOCK
MASASHI SALVADOR made our wiki format.


XIN YIN wrote a complicated program for Bioclock project modeling.


XIASONG SUN came to the lab when others couldn't during the examination.


MARINA KOMATSU made a presentation at a meeting of synthetic biology.


AND ALL THE MEMBERS CONTRIBUTED TO THE EXPERIMENTS AND MAKING WIKI. OUR PROJECT WOULD NEVER BE LIKE IT IS WITHOUT ANY OF YOU. WE HAD A GREAT IGEM YEAR TOGETHER! THANK YOU ALL VERY MUCH!


wrote by YOKO TOMIZAWA of Bioclock project


And YOKO TOMIZAWA planned the Bioclock project, who we all appreciate very much.

UNIVERSITY

The University of Tokyo, Japan

CONTACT

Please send email to our advisor, Craig Hamilton to the following address

c.hamilton3 AT gmail DOT com

Retrieved from "http://2009.igem.org/Team:Todai-Tokyo/Team"