Team:UC Davis/Contacts References

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Latest revision as of 01:16, 15 December 2009

Contacts/References:

References:

1. Ze-Chun Yuan, Pu Liu, Panatda Saenkham, Kathleen Kerr, and Eugene W. Nester (2007). Transcriptome Profiling and Fuctional Analysis of Agrobacterium tumefaciens Reveals a General Conserved Response to Acidic Conditions (pH 5.5) and a Complex Acid-Mediated Signaling Involved in Agrobacterium-Plant Interactions. Journal of Bacteriology. 190(2). p. 494-507.

2.Luoping Li, Yonghui Jia, Qingming Hou, Trevor C. Charles, Eugene W. Nester, and Shen Q. Pan. (2002). A global pH sensor: Agrobacterium sensor protein ChvG regulates acid-inducible genes on its two chromosomes and Ti plasmid. PNAS. 99(19).12369-12374

3. Nicholas J. Mantis and Stephen C. Winans. (1993), The Chromosomal Response Regulatory Gene chvI of Agrobacterium tumefaciens Complements an Escherichia coli phoB Mutation and Is Required for Virulence. Journal of Bacteriology. 175(20). p.6626-6636.

4. Trevor C. Charles and Eugene W. Nester. (1993). A Chromosomally Encoded Two-Component Sensory Transduction System Is Required for Virulence of Agrobacterium tumefaciens. Journal of Bacteriology.175(20) p. 6614-6625.

5.Jeffrey M. Skerker, Barrett S. Perchuk, Albert Siryaporn, Emma A. Lubin, Orr Ashenberg, Mark Goulian and Michael T. Laub. (2008). Rewiring the Specificity of Two-Component Signal Transduction Systems. Cell. (133)6. pp.1043-1054.

6.Takashi Aoyama, Mituru Takanami, Kozo Makino, and Atsuhiro Oka. (1991). Cross-talk between the virulence and phosphate regulons of Agrobacterium tumefaciens caused by an unusual interaction of the transcriptional activator with a regulatory DNA element. . Mol. Gen. Genet. (1991). 227(3), pp.385-390.

7. Edwin van Bloois. Remko T. Winter. Dick B. Janssen, Marco W. Fraaije. 2009, Export of functional Streptomyces coelicolor alditol oxidase to the periplasm or cell surface of Escherichia coli and its application in whole-cell biocatalysis. (2009). Appl. Microbiol. Biotechnol.. (2009). 83(4). p. 679-687.

8.Dariusz Stepniak, Liesbeth Spaenij-Dekking, Cristina Mitea, Martine Moester, Arnoud de Ru, Renee Baak-Pablo, Peter van Veelen, Luppo Edens and Frits Koning. (2006). Highly efficient gluten degradation with a newly identified prolyl endoprotease: implications for celiac disease. Am J Physiol Gastrointest Liver Physiol. (2006).291(4): G621-G629.

9. Heung-Chae Junge, Joon-Hyun Park, Seung-Hwan Park, Jean-Michel Lebeault, and Jae-Gu Pan. (1998). Expression of carboxymethylcellulase on the Surface of Escerichia coli using Pseudomonas syringae ice nucleation protein. Enzyme and Microbial Technology. (1998). 22(5): 348-354.

10. Michael Klose, Anja Störiko, York-Dieter Stierhof, Ingrid Hindennach, Bettina Mutschler, and Ulf Henning. (1993). Membrane Assembly of the Outer Membrane Protein OmpA of Escherichia coli. Journal of Biological Chemistry. 268(34). pp. 25664-25670.

11.The Celiac Site. (2009). http://www.theceliacsite.com/

12.Jonathan Gass, Michael T. Bethune, Matthew Siegel, Andrew Spencer, and Chaitan Khosla. (2007). Combination Enzyme Therapy for Gastric Digestion of Dietary Gluten in Patients With Celiac Sprue. Gastroenterology. 2007; 133: 472-480.

13.Roland Freud, Michael Klose, and Ulf Henning. (1989). Export and Sorting of the Escherichia coli Outer Membrane Protein OmpA. Journal of Bioenergetics and Biomembranes. 22 (3). pp.441-449.

14.National Digestive Diseases Information Clearinghouse (NDDIC).(September 2008). http://digestive.niddk.nih.gov/ddiseases/pubs/celiac/

15. Se Whan Park, Moon Gyu Chung, Hwa Young Lee, Jeong Yoon Kim, and Young Ha Rhee. (2008). Stable expression and secretion of the polyhydroxybutyrate depolymerase of Paucimonas lemoignei in Escherichia coli. J. Microbiology. 46(6). pp. 662-669.

Safety:

Would any of your project ideas raise safety issues in terms of:
- researcher safety, NONE
- public safety, or NONE
- environmental safety? NONE
Is there a local biosafety group, committee, or review board at your institution? YES
What does your local biosafety group think about your project? THEY FIND IT SAFE - REGULAR LAB STRAIN ECOLI AND GFP
Do any of the new BioBrick parts that you made this year raise any safety issues? NO
- If yes, did you document these issues in the Registry? N/A

@@ Line 77: / Line 77: @@
 Involved in <span style="font-style: italic;">Agrobacterium</span>-Plant
 Interactions. <span style="text-decoration: underline;">Journal of
-Bacteriology.</span> Jan. 208, p. 494-507.<br>
+Bacteriology.</span> 190(2). p. 494-507.<br>
 </span></small></p>
 <p style="color: rgb(0, 0, 0); text-align: left;" class="MsoNormal"><small><span
@@ Line 89: / Line 89: @@
 Ti
 plasmid. <span style="text-decoration: underline;">PNAS</span>.
-(99)19.12369-12374<br>
+(19).12369-12374<br>
 </span></small></p>
 <p style="color: rgb(0, 0, 0); text-align: left;" class="MsoNormal"><small><span
@@ Line 101: / Line 101: @@
 of <span style="font-style: italic;">Agrobacterium tumefaciens </span>Complements
 an
-<span style="font-style: italic;">Escherichia coli</span><br>
+<span style="font-style: italic;">Escherichia coli</span> <span style="font-style: italic;"> phoB</span> Mutation and Is Required
-<span style="font-style: italic;">phoB</span> Mutation and Is Required
+for Virulence. <span style="text-decoration: underline;">Journal of Bacteriology.</span> 175(20). p.6626-6636.<br>
-for Virulence. <span style="text-decoration: underline;">J.
-Microbiology.</span> Oct. 1993, p.6626-6636.<br>
 </span></small></p>
 <p style="color: rgb(0, 0, 0); text-align: left;" class="MsoNormal"><small><span
@@ Line 114: / Line 112: @@
 Virulence of
 <span style="font-style: italic;">Agrobacterium tumefaciens. </span><span
-style="text-decoration: underline;">J. Bacteriology</span>. Oct. 1993,
+style="text-decoration: underline;">Journal of Bacteriology</span>.175(20)
 p. 6614-6625.<br>
 </span></small></p>
@@ Line 123: / Line 121: @@
 Orr Ashenberg, Mark Goulian and Michael T. Laub. (2008). </b>Rewiring
 the
-Specificity of Two-Component Signal Transduction Systems. <o:p></o:p></span><br>
+Specificity of Two-Component Signal Transduction Systems. </span></small><span
+style="text-decoration: underline;">Cell</span>. (133)6.
+pp.1043-1054.<small><span
+style="font-size: 12pt; font-family: &quot;Times New Roman&quot;,&quot;serif&quot;;"><o:p></o:p></span><br>
 <span style="font-size: 13.5pt; font-family: &quot;Times New Roman&quot;,&quot;serif&quot;;"><br>
 <span style="font-weight: bold;">6</span>.</span><b><span
@@ Line 138: / Line 139: @@
 tumefaciens </span>caused by an unusual
 interaction of the transcriptional activator with a regulatory DNA
-element. <span style="text-decoration: underline;">Mol. Gen. Genet</span>.
+element. </span></small><span class="ti">.<span
-(1991) 227, p. 385-390.</span><span
+style="font-family: &quot;Times New Roman&quot;,&quot;serif&quot;;"><span
+style="text-decoration: underline;"> </span></span></span><small><span
+style="font-size: 12pt; font-family: &quot;Times New Roman&quot;,&quot;serif&quot;;"><span
+style="text-decoration: underline;">Mol. Gen. Genet</span>.
+(1991). 227(3), pp.385-390.</span><span
 style="font-size: 18pt; font-family: &quot;Times New Roman&quot;,&quot;serif&quot;;"><o:p></o:p></span><br>
 <span
@@ Line 151: / Line 156: @@
 application in
 whole-cell biocatalysis. (2009). <span
-style="text-decoration: underline;">Appl. Microbiol. Biotechnol</span>.
+style="text-decoration: underline;">Appl. Microbiol. Biotechnol.</span>.
-. p. 679-687.<o:p></o:p><br>
+(2009). 83(4). p. 679-687.<o:p></o:p><br>
 </span></small></p>
 <p style="color: rgb(0, 0, 0); text-align: left;" class="MsoNormal"><small><span
@@ Line 160: / Line 165: @@
 Moester, Arnoud de
 Ru, Renee Baak-Pablo, Peter van Veelen, Luppo Edens and Frits Koning. </b>(2006).
-Highly efficient gluten degradation with a newly identifies prolyl
+Highly efficient gluten degradation with a newly identified prolyl
 endoprotease:
 implications for celiac disease. <span
 style="text-decoration: underline;">Am J Physiol Gastrointest Liver
-Physiol</span>. 291: G621-G629, 2006.<o:p></o:p></span><br>
+Physiol</span>. (2006).291(4): G621-G629.<o:p></o:p></span><br>
 <b><span
 style="font-size: 12pt; line-height: 115%; font-family: &quot;Times New Roman&quot;,&quot;serif&quot;;"><br>
@@ Line 178: / Line 183: @@
 nucleation
 protein. <span style="text-decoration: underline;">Enzyme and
-Microbial Technology</span>. 22: 348-354, 1998.<br>
+Microbial Technology</span>. (1998). 22(5): 348-354.<br>
 </span></small></p>
 <p style="color: rgb(0, 0, 0); text-align: left;" class="MsoNormal"><small><span
@@ Line 189: / Line 194: @@
 Membrane Protein OmpA of <span style="font-style: italic;">Escherichia
 coli. </span><span style="text-decoration: underline;">Journal of
-Biological Chemistry.</span> (268) 34, pp. 25664-25670.<br>
+Biological Chemistry.</span> 268(34). pp. 25664-25670.<br>
 </span></small></p>
 <p style="color: rgb(0, 0, 0); text-align: left;" class="MsoNormal"><small><span
 style="font-size: 12pt; line-height: 115%; font-family: &quot;Times New Roman&quot;,&quot;serif&quot;;"><span
 style="font-weight: bold;">11.</span><b>The Celiac Site</b>. (2009).
-http://digestive.niddk.nih.gov/ddiseases/pubs/celiac/<br>
+http://www.theceliacsite.com/<br>
 </span></small></p>
 <p style="color: rgb(0, 0, 0); text-align: left;" class="MsoNormal"><small><span
@@ Line 219: / Line 224: @@
 style="font-size: 12pt; line-height: 115%; font-family: &quot;Times New Roman&quot;,&quot;serif&quot;;"><span
 style="font-weight: bold;">14.</span><b>National Digestive Diseases
-Information Clearinghouse (NDDIC)</b>. September
+Information Clearinghouse (NDDIC)</b>.(September
-. http://digestive.niddk.nih.gov/ddiseases/pubs/celiac/<br>
+). http://digestive.niddk.nih.gov/ddiseases/pubs/celiac/<br>
 </span></small></p>
 <p style="color: rgb(0, 0, 0); text-align: left;" class="MsoNormal"><small><span
@@ Line 237: / Line 242: @@
 <p style="color: rgb(0, 0, 0); text-align: left;" class="MsoNormal"><small><span
 style="font-size: 12pt; line-height: 115%; font-family: &quot;Times New Roman&quot;,&quot;serif&quot;;"></span></small><small><b><u><span
-style="font-size: 22pt; line-height: 115%; font-family: &quot;Times New Roman&quot;,&quot;serif&quot;;"><small
+style="font-size: 22pt; line-height: 115%; font-family: &quot;Times New Roman&quot;,&quot;serif&quot;;"></span></u></b></small><font
-style="font-style: italic; font-family: Helvetica,Arial,sans-serif;"></small></span></u></b></small><span
+size="+1"><span
-style="font-size: 12pt; line-height: 115%; font-family: &quot;Times New Roman&quot;,&quot;serif&quot;; color: rgb(0, 0, 0);"><br
+style="font-size: 12pt; line-height: 115%; font-family: &quot;Times New Roman&quot;,&quot;serif&quot;; color: rgb(0, 0, 0); font-weight: bold;">Safety:</span></font></p>
-style="">
+<ol>
+<li style="text-align: left;">Would any of your project ideas raise
+safety issues in terms of:
+<ul>
+<li>researcher safety,&nbsp; <span style="font-weight: bold;">NONE
+</span></li>
+<li>public safety, or&nbsp; <span style="font-weight: bold;">NONE
+</span></li>
+<li>environmental safety?&nbsp; <span style="font-weight: bold;">NONE</span><br>
+</li>
+</ul>
+</li>
+<li style="text-align: left;">Is there a local biosafety group,
+committee, or review board at your institution?&nbsp; <span
+style="font-weight: bold;">YES</span><br>
+</li>
+<li style="text-align: left;">What does your local biosafety group
+think about your project? <span style="font-weight: bold;">THEY FIND
+IT SAFE - REGULAR LAB STRAIN ECOLI AND GFP</span><br>
+</li>
+<li>
+<div style="text-align: left;">Do any of the new BioBrick parts
+that you made this year raise any safety issues?&nbsp; <span
+style="font-weight: bold;">NO </span></div>
+<ul style="text-align: left;">
+<li>If yes, did you document these issues in the Registry? <span
+style="font-weight: bold;">N/A</span><br>
+</li>
+</ul>
+</li>
+</ol>
+<p style="color: rgb(0, 0, 0); text-align: left;" class="MsoNormal"><span
+style="font-size: 12pt; line-height: 115%; font-family: &quot;Times New Roman&quot;,&quot;serif&quot;; color: rgb(0, 0, 0);"><br>
+<br style="">
 </span></p>
 <span style="color: rgb(255, 255, 0);"> </span></div>
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