From 2009.igem.org
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| | =References= | | =References= |
| - | # '''Photoregulation in prokaryotes.''' Purcell EB, Crosson S. Curr Opin Microbiol. 2008 Apr;11(2):168-78. Epub 2008 Apr 8. Review. [http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=18400553 Pubmed]
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| - | # Strickland et al. '''Light-activated DNA binding in a designed allosteric protein.''' Proceedings of the National Academy of Sciences (2008) vol. 105 (31) pp. 10709
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| - | # Ávila-Pérez et al. '''Blue Light Activates the σB-Dependent Stress Response of Bacillus subtilis via YtvA.''' Journal of bacteriology (2006)
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| - | # Jaubert et al. '''Light and redox control of photosynthesis gene expression in Bradyrhizobium: dual roles of two PpsR.''' Journal of Biological Chemistry (2004)
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| - | # Lawson et al. '''E. coli trp repressor forms a domain-swapped array in aqueous alcohol.''' Structure (2004) vol. 12 (6) pp. 1099-1108
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| - | # Cusanovich and Meyer.'''Photoactive yellow protein: a prototypic PAS domain sensory protein and development of a common …. ''' BIOCHEMISTRY-PENNSYLVANIA THEN WASHINGTON- (2003)
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| - | # Harper et al. '''Structural basis of a phototropin light switch.''' Science (2003)
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| - | # Baliga et al. '''Coordinate regulation of energy transduction modules in Halobacterium sp. analyzed by a global systems approach.''' Proceedings of the National Academy of Sciences (2002) vol. 99 (23) pp. 14913-14918
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| - | # Baliga et al. '''Genomic and genetic dissection of an archaeal regulon.''' Proceedings of the National Academy of Sciences (2001) vol. 98 (5) pp. 2521
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| - | # Reedstrom et al. '''Affinity and specificity of trp repressor-DNA interactions studied with fluorescent oligonucleotides.''' Journal of Molecular Biology (1997) vol. 273 (3) pp. 572-585
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| - | # Gropp and Betlach. '''The bat gene of Halobacterium halobium encodes a trans-acting oxygen inducibility factor.''' Proceedings of the National Academy of Sciences (1994)
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| - | # Shand and Betlach. '''Expression of the bop gene cluster of Halobacterium halobium is induced by low oxygen tension and by ….''' Journal of bacteriology (1991)
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| - | # Bass et al. '''Mutant Trp repressors with new DNA-binding specificities.''' Science (1988) vol. 242 (4876) pp. 240-245
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| - | # Bass et al. '''DNA specificity determinants of Escherichia coli tryptophan repressor binding.''' Genes & Development (1987) vol. 1 (6) pp. 565-572
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Revision as of 21:37, 3 June 2009
Summer plan
Who is coming which week this summer !
Summer Planning
Brainstorming
Our project ideas so far are listed in the Brainstorming section
Team Meetings
Meetings history and reports: all team's meetings so far with meeting contents, attending members...
Upcoming meetings: stuff to talk about during next meeting
Before next meeting to do list
- URGENT
- Find 12 mutants LOVTAP DNA sequence + length
- Ask for 12 mutants
- "' Find genomic sequence of LOVTAP and R-bphB"'
- Make a material list (see LOVTAP to do list)
- LOGO & WIKI
Project subparts
- 1) LOVTAP
- LOVTAP project + general to do list
- 2) R-BphP
- R-BphP project + general to do list
- 3) Modelling
- Modelling project + general to do list
- find the purification protocols etc. in the supplementary material, not by asking the authors
- annotate the lovtap sequence to show where the various functional domains are
- add all relevant references in the format i have given below, including the PNAS paper, etc.
References
(see on "references subpart")
"
