Team:KULeuven/How it works

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[[Image:Mssbluevanilla.jpg|right|thumb|425px|Schematic illustration of the setup for controlling concetration of molecule 'X']]
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[[Image:Missbluevanilla.png|right|thumb|425px|Schematic illustration of the setup for controlling concentration of Vanillin]]
=== Feedback control system ===
=== Feedback control system ===
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=== Vanilla synthesis ===
=== Vanilla synthesis ===
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To produce the odour of Vanilla, Essencia coli synthesises Vanillin ("X"). This molecule is derived from the amino acid tyrosine, in a process involving five enzymes. The successive transcription and translation of ''Sam8, Sam5'', COMT, ''fcs, ech'' leads to Vanillin production, which then diffuses out of the cell.
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To produce the odour of Vanilla, Essencia coli synthesises Vanillin, which easily diffuse out of the cel. This molecule is derived from the amino acid tyrosine, in a process involving five enzymes. The successive transcription and translation of ''Sam8, Sam5'', COMT, ''fcs, ech'' leads to Vanillin production, which then diffuses out of the cell.
=== Blue Light ===
=== Blue Light ===
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A key/lock mechanism opens the door to synthesis. The transcription of the '' 'key' ''gene commences when a beam of blue light hits the Blue Light Receptor, thereby activating the promotor. The intensity of the beam can be adjusted at will. The 'key' mRNA ("A") then interacts with the 'lock' and clears the road for RNA Polymerase to transcribe the five genes.
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A key/lock mechanism opens the door to synthesis. The transcription of the '' 'key' ''gene commences when the blue light receptor absorbs a photon of blue light, thereby activating the promotor. The intensity of the light can be adjusted at will. The 'key' mRNA ("A") then interacts with the 'lock' and clears the road for RNA Polymerase to transcribe the locked genes.
=== VirA/VirG Vanillin Receptor ===
=== VirA/VirG Vanillin Receptor ===
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Essencia coli is equipped with the two component regulatory system VirA/VirG, derived from ''Agrobacterium tumefaciens''. The VirA protein senses phenolic compounds -in this case Vanillin- and then transduces the signal through phosphate transfer to the VirG protein. VirG acts as a response regulator by binding to the upstream region of the ''anti-key'' gene and activating its transcription. The anti-key ("B") is the anti-sense mRNA of the key and will therefore block it after binding.
Essencia coli is equipped with the two component regulatory system VirA/VirG, derived from ''Agrobacterium tumefaciens''. The VirA protein senses phenolic compounds -in this case Vanillin- and then transduces the signal through phosphate transfer to the VirG protein. VirG acts as a response regulator by binding to the upstream region of the ''anti-key'' gene and activating its transcription. The anti-key ("B") is the anti-sense mRNA of the key and will therefore block it after binding.
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=== A + B --> AB ===
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=== Key and antikey ===
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When B is present, it will bind A with such great affinity that the reaction to AB occurs. So, the more of a molecule X is produced, the more of B will be transcribed and will bind to A. The bound product AB puts a stop to the synthesis of X.
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When the antikey is present, it will bind the key with such great affinity that a complex antikey+key occurs. So, the more Vanillin is produced, the more of the anti-key will be transcribed and will bind to key. The bound complex of key and anti-key puts a stop to the synthesis vanillin.

Latest revision as of 10:15, 27 August 2009


How it works...

Schematic illustration of the setup for controlling concentration of Vanillin

Feedback control system

The novelty of this project is a unique control system that functions through a feedback mechanism. The desired value of an odour like Vanilla can be adjusted using the intensity of a blue light beam. Essencia coli then senses the concentration of the odour molecule and activates the inhibition mechanism of an anti-key. In this way the concentration can be kept constant at any initial set point.

This concept can also be applied to other odours or even flavours. In theory, any molecule that acquires a constant value is a possible candidate.

Vanilla synthesis

To produce the odour of Vanilla, Essencia coli synthesises Vanillin, which easily diffuse out of the cel. This molecule is derived from the amino acid tyrosine, in a process involving five enzymes. The successive transcription and translation of Sam8, Sam5, COMT, fcs, ech leads to Vanillin production, which then diffuses out of the cell.

Blue Light

A key/lock mechanism opens the door to synthesis. The transcription of the 'key' gene commences when the blue light receptor absorbs a photon of blue light, thereby activating the promotor. The intensity of the light can be adjusted at will. The 'key' mRNA ("A") then interacts with the 'lock' and clears the road for RNA Polymerase to transcribe the locked genes.

VirA/VirG Vanillin Receptor

Essencia coli is equipped with the two component regulatory system VirA/VirG, derived from Agrobacterium tumefaciens. The VirA protein senses phenolic compounds -in this case Vanillin- and then transduces the signal through phosphate transfer to the VirG protein. VirG acts as a response regulator by binding to the upstream region of the anti-key gene and activating its transcription. The anti-key ("B") is the anti-sense mRNA of the key and will therefore block it after binding.

Key and antikey

When the antikey is present, it will bind the key with such great affinity that a complex antikey+key occurs. So, the more Vanillin is produced, the more of the anti-key will be transcribed and will bind to key. The bound complex of key and anti-key puts a stop to the synthesis vanillin.

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