Team:Chiba/Project/Delay Switch

From 2009.igem.org

(Difference between revisions)
(→Exp #3' LuxR Mutants (One More Plan : Direct Screening for Delay Switcher))
(→Exp #3' LuxR Mutants (One More Plan : Direct Screening for Delay Switcher))
Line 116: Line 116:
==== [[Team:Chiba/Project/Delay_Switch/Mutants|Exp #3' LuxR Mutants (One More Plan : Direct Screening for Delay Switcher)]] ====
==== [[Team:Chiba/Project/Delay_Switch/Mutants|Exp #3' LuxR Mutants (One More Plan : Direct Screening for Delay Switcher)]] ====
:In this plan, we introduced the random mutation into the entire reading frame of LuxR using error-prone PCR.  
:In this plan, we introduced the random mutation into the entire reading frame of LuxR using error-prone PCR.  
-
 
|}
|}
=== Results (2009) ===
=== Results (2009) ===

Revision as of 16:54, 25 September 2009


The Project


Delay Switch


Parallel Activation


Series Activation

E.coli Time Manager Since 2008


Home The Team Parts Reference Notebook Protocols Links Acknowledgements Contact

Constructing A Delay Switch Since 2008

In principle, there are three ways to delay the activation of chemical communications;

  1. Silencing the Speakers: Rate of signal accumulation down-regulated, for instance, by slowing down the signal generators.
  2. Desensitize Receivers: Switching threshold elevated, for instance, by using insensitive receiver/ reporter systems.
  3. Partial Blocking: Decreasing the by chewing the signal up.

Inter-species communications! We decided to go for the strategy inspired by Japanese-classic experience; Whenever we speak to somebody in English, we often experience a certain delay in activating the communication. We though this is exactly what we pursued in. See Exp #4. Same applies to the reverse, too. When somebody speaks to us, we definitely need some time (sometime infinite) to get activated. This is all in spite that he/ she was loud and clear enough. The less affinity (perception) we have to English, the longer we need to activate them.See exp #5.

Experiments (2008)

For details, click each of the index titles

Exp #1 Partial quenching of signals (jamming)

The idea was that the effective concentration of AHL in receiver cell get significantly decreased due to the constantly expressing AiiA, thereby enlarging the delay time.

Exp #2 Balancing Player

In this section, we intended to create time-delay by altering the amount of luxR protein per cell. Since the amount of LuxR that receives AHL differs, we hypothesized that the time required to reach the threshold AHL concentration will differ.

Exp #3 LuxR Mutants

Probably, the most straightforward approach to make variations in delay time is to create a number of LuxR mutants with different sensitivity. We thought the higher the sensitivity is, the shorter the delay time would be. The lower the sensitivity is, the slower the switch response should be.

Exp #4 Spoken to by Foreigners

In this plan, we induce cross-talk of quorum sensing by changing sender protein. This results in slower activation of receivers, when AHL concentration is increasing.

Exp #5 Speaking to Foreigners

In this plan, we induce cross-talk of quorum sensing by changing receiver protein. It is known that receiver proteins can work with the stimuli of signaling molecule even from another species of bacteria.
-> go to Team Chiba 2008 Project Page

Results (2008)

In conclusion, we tried (and are trying) to device a series of delay-switches by designing the "switching consortia". We got limited, by certain success in generating delay switches.

-> get more informations

Experiments (2009)

For details, click the index titles

Exp #3' LuxR Mutants (One More Plan : Direct Screening for Delay Switcher)

In this plan, we introduced the random mutation into the entire reading frame of LuxR using error-prone PCR.

Results (2009)

Retrieved from "http://2009.igem.org/Team:Chiba/Project/Delay_Switch"