Team:TUDelft/Modeling Conjugation Plots

From 2009.igem.org

(Difference between revisions)
(Undo revision 153660 by Sriram.tk (Talk))
 
(5 intermediate revisions not shown)
Line 1: Line 1:
{{Template:TUDelftiGEM2009_menu_Model}}
{{Template:TUDelftiGEM2009_menu_Model}}
-
=Conjugation Modeling Plots=
+
='''Conjugation Modeling Plots'''=
 +
Here is a selection of the various simulations made.
-
 
+
==''SIM1''==
-
==SIM1==
+
Parameters used:  
Parameters used:  
Line 46: Line 46:
|}
|}
-
==SIM2==
+
==''SIM2''==
Parameters used:  
Parameters used:  
Line 57: Line 57:
Animation of conjugation showing all colonies:
Animation of conjugation showing all colonies:
-
[[Image:Gr30ng099_1hr_ani_all.gif]]
+
[[Image:Gr30ng099_1hr_ani_all.gif|border]]
{|border = "0"
{|border = "0"
Line 90: Line 90:
|}
|}
-
==SIM3==
+
==''SIM3''==
Parameters used:  
Parameters used:  
Line 132: Line 132:
-
==SIM4==
+
==''SIM4''==
Parameters used:  
Parameters used:  
Line 174: Line 174:
-
==SIM5==
+
==''SIM5''==
Parameters used:  
Parameters used:  
Line 185: Line 185:
Animation of conjugation showing all colonies:
Animation of conjugation showing all colonies:
-
[[Image:Gr60ng099_1hr_ani_all.gif]]
+
[[Image:Gr60ng099_1hr_ani_all.gif|border]]
{|border = "0"
{|border = "0"
Line 219: Line 219:
-
==SIM6==
+
==''SIM6''==
Parameters used:  
Parameters used:  
Line 261: Line 261:
-
==SIM7==
+
==''SIM7''==
Parameters used:  
Parameters used:  
Line 303: Line 303:
-
==SIM8==
+
==''SIM8''==
Parameters used:  
Parameters used:  
Line 344: Line 344:
|}
|}
-
==SIM9==
+
==''SIM9''==
Parameters used:  
Parameters used:  

Latest revision as of 20:15, 21 October 2009

Conjugation Modeling Plots

Here is a selection of the various simulations made.

SIM1

Parameters used:

gr = 20 μm/hr

λ = 5.76 CFU/mm2 (Nd = 10000)

Ratio of Donors to Recipients = 1

Recipients at T = 0 hr.

Donors at T = 0 hr.

Transconjugants at T = 0.1 hr.

Transconjugants at T = 0.2 hr.

Transconjugants at T = 0.3 hr.

Transconjugants at T = 0.4 hr.

Transconjugants at T = 0.5 hr.

Transconjugants at T = 0.6 hr.

Transconjugants at T = 0.7 hr.

Transconjugants at T = 0.8 hr.

Transconjugants at T = 0.9 hr.

Transconjugants at T = 1.0 hr.

SIM2

Parameters used:

gr = 30 μm/hr

λ = 5.76 CFU/mm2 (Nd = 10000)

Ratio of Donors to Recipients = 1

Animation of conjugation showing all colonies: Gr30ng099 1hr ani all.gif

Recipients at T = 0 hr.

Donors at T = 0 hr.

Transconjugants at T = 0.1 hr.

Transconjugants at T = 0.2 hr.

Transconjugants at T = 0.3 hr.

Transconjugants at T = 0.4 hr.

Transconjugants at T = 0.5 hr.

Transconjugants at T = 0.6 hr.

Transconjugants at T = 0.7 hr.

Transconjugants at T = 0.8 hr.

Transconjugants at T = 0.9 hr.

Transconjugants at T = 1.0 hr.

SIM3

Parameters used:

gr = 40 μm/hr

λ = 5.76 CFU/mm2 (Nd = 10000)

Ratio of Donors to Recipients = 1

Recipients at T = 0 hr.

Donors at T = 0 hr.

Transconjugants at T = 0.1 hr.

Transconjugants at T = 0.2 hr.

Transconjugants at T = 0.3 hr.

Transconjugants at T = 0.4 hr.

Transconjugants at T = 0.5 hr.

Transconjugants at T = 0.6 hr.

Transconjugants at T = 0.7 hr.

Transconjugants at T = 0.8 hr.

Transconjugants at T = 0.9 hr.

Transconjugants at T = 1.0 hr.


SIM4

Parameters used:

gr = 50 μm/hr

λ = 5.76 CFU/mm2 (Nd = 10000)

Ratio of Donors to Recipients = 1

Recipients at T = 0 hr.

Donors at T = 0 hr.

Transconjugants at T = 0.1 hr.

Transconjugants at T = 0.2 hr.

Transconjugants at T = 0.3 hr.

Transconjugants at T = 0.4 hr.

Transconjugants at T = 0.5 hr.

Transconjugants at T = 0.6 hr.

Transconjugants at T = 0.7 hr.

Transconjugants at T = 0.8 hr.

Transconjugants at T = 0.9 hr.

Transconjugants at T = 1.0 hr.


SIM5

Parameters used:

gr = 60 μm/hr

λ = 5.76 CFU/mm2 (Nd = 10000)

Ratio of Donors to Recipients = 1

Animation of conjugation showing all colonies: Gr60ng099 1hr ani all.gif

Recipients at T = 0 hr.

Donors at T = 0 hr.

Transconjugants at T = 0.1 hr.

Transconjugants at T = 0.2 hr.

Transconjugants at T = 0.3 hr.

Transconjugants at T = 0.4 hr.

Transconjugants at T = 0.5 hr.

Transconjugants at T = 0.6 hr.

Transconjugants at T = 0.7 hr.

Transconjugants at T = 0.8 hr.

Transconjugants at T = 0.9 hr.

Transconjugants at T = 1.0 hr.


SIM6

Parameters used:

gr = 30 μm/hr

λ = 1.44 CFU/mm2 (Nd = 1000)

Ratio of Donors to Recipients = 1

Recipients at T = 0 hr.

Donors at T = 0 hr.

Transconjugants at T = 0.1 hr.

Transconjugants at T = 0.2 hr.

Transconjugants at T = 0.3 hr.

Transconjugants at T = 0.4 hr.

Transconjugants at T = 0.5 hr.

Transconjugants at T = 0.6 hr.

Transconjugants at T = 0.7 hr.

Transconjugants at T = 0.8 hr.

Transconjugants at T = 0.9 hr.

Transconjugants at T = 1.0 hr.


SIM7

Parameters used:

gr = 30 μm/hr

λ = 2.88 CFU/mm2 (Nd = 5000)

Ratio of Donors to Recipients = 1

Recipients at T = 0 hr.

Donors at T = 0 hr.

Transconjugants at T = 0.1 hr.

Transconjugants at T = 0.2 hr.

Transconjugants at T = 0.3 hr.

Transconjugants at T = 0.4 hr.

Transconjugants at T = 0.5 hr.

Transconjugants at T = 0.6 hr.

Transconjugants at T = 0.7 hr.

Transconjugants at T = 0.8 hr.

Transconjugants at T = 0.9 hr.

Transconjugants at T = 1.0 hr.


SIM8

Parameters used:

gr = 20 μm/hr

λ = 11.53 CFU/mm2 (Nd = 20000)

Ratio of Donors to Recipients = 1

Recipients at T = 0 hr.

Donors at T = 0 hr.

Transconjugants at T = 0.1 hr.

Transconjugants at T = 0.2 hr.

Transconjugants at T = 0.3 hr.

Transconjugants at T = 0.4 hr.

Transconjugants at T = 0.5 hr.

Transconjugants at T = 0.6 hr.

Transconjugants at T = 0.7 hr.

Transconjugants at T = 0.8 hr.

Transconjugants at T = 0.9 hr.

Transconjugants at T = 1.0 hr.

SIM9

Parameters used: gr = 20 μm/hr

λ = 23.06 CFU/mm2 (Nd = 40000)

Ratio of Donors to Recipients = 1

Recipients at T = 0 hr.

Donors at T = 0 hr.

Transconjugants at T = 0.1 hr.

Transconjugants at T = 0.2 hr.

Transconjugants at T = 0.3 hr.

Transconjugants at T = 0.4 hr.

Transconjugants at T = 0.5 hr.

Transconjugants at T = 0.6 hr.

Transconjugants at T = 0.7 hr.

Transconjugants at T = 0.8 hr.

Transconjugants at T = 0.9 hr.

Transconjugants at T = 1.0 hr.

<< Back to Modeling Conjugation

Retrieved from "http://2009.igem.org/Team:TUDelft/Modeling_Conjugation_Plots"