Team:Stanford/NotebookPage/6 August 2009

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(New page: {{Template:MainMenu}} ==Daily Work== '''Goals''' *Morning: **vBOL tutorial polishing **purchase omnigraffle **possible wiki template work *Afternoon **Red papers for NO/SoxR affinity a...)
 
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{{Template: Stanford Notebook Calendar}}
==Daily Work==
==Daily Work==

Latest revision as of 20:28, 20 October 2009

June
MTWTFSS
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[http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/8_June_2009&action=edit 8] [http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/9_June_2009&action=edit 9] [http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/10_June_2009&action=edit 10] [http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/11_June_2009&action=edit 11] [http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/12_June_2009&action=edit 12] [http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/13_June_2009&action=edit 13] [http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/14_June_2009&action=edit 14]
[http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/15_June_2009&action=edit 15] [http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/16_June_2009&action=edit 16] [http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/17_June_2009&action=edit 17] [http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/18_June_2009&action=edit 18] [http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/19_June_2009&action=edit 19] [http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/20_June_2009&action=edit 20] [http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/21_June_2009&action=edit 21]
[http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/22_June_2009&action=edit 22] [http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/23_June_2009&action=edit 23] [http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/24_June_2009&action=edit 24] [http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/25_June_2009&action=edit 25] [http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/26_June_2009&action=edit 26] [http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/27_June_2009&action=edit 27] [http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/28_June_2009&action=edit 28]
[http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/29_June_2009&action=edit 29] [http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/30_June_2009&action=edit 30]
July
MTWTFSS
    [http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/1_July_2009&action=edit 1] [http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/2_July_2009&action=edit 2] [http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/3_July_2009&action=edit 3] [http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/4_July_2009&action=edit 4] [http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/5_July_2009&action=edit 5]
[http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/6_July_2009&action=edit 6] [http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/7_July_2009&action=edit 7] [http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/8_July_2009&action=edit 8] [http://2009.igem.org/Team:Stanford/NotebookPage/9_July_2009 9] [http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/10_July_2009&action=edit 10] [http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/11_July_2009&action=edit 11] [http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/12_July_2009&action=edit 12]
[http://2009.igem.org/Team:Stanford/NotebookPage/13_July_2009 13] [http://2009.igem.org/Team:Stanford/NotebookPage/14_July_2009 14] [http://2009.igem.org/Team:Stanford/NotebookPage/15_July_2009 15] [http://2009.igem.org/Team:Stanford/NotebookPage/16_July_2009 16] [http://2009.igem.org/Team:Stanford/NotebookPage/17_July_2009 17] [http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/18_July_2009&action=edit 18] [http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/19_July_2009&action=edit 19]
[http://2009.igem.org/Team:Stanford/NotebookPage/20_July_2009 20] [http://2009.igem.org/Team:Stanford/NotebookPage/21_July_2009 21] [http://2009.igem.org/Team:Stanford/NotebookPage/22_July_2009 22] [http://2009.igem.org/Team:Stanford/NotebookPage/23_July_2009 23] [http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/24_July_2009&action=edit 24] [http://2009.igem.org/Team:Stanford/NotebookPage/25_July_2009 25] [http://2009.igem.org/Team:Stanford/NotebookPage/26_July_2009 26]
[http://2009.igem.org/Team:Stanford/NotebookPage/27_July_2009 27] [http://2009.igem.org/Team:Stanford/NotebookPage/28_July_2009 28] [http://2009.igem.org/Team:Stanford/NotebookPage/29_July_2009 29] [http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/30_July_2009&action=edit 30] [http://2009.igem.org/Team:Stanford/NotebookPage/31_July_2009 31]
August
MTWTFSS
          [http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/1_August_2009&action=edit 1] [http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/2_August_2009&action=edit 2]
[http://2009.igem.org/Team:Stanford/NotebookPage/3_August_2009 3] [http://2009.igem.org/Team:Stanford/NotebookPage/4_August_2009 4] [http://2009.igem.org/Team:Stanford/NotebookPage/5_August_2009 5] [http://2009.igem.org/Team:Stanford/NotebookPage/6_August_2009 6] [http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/7_August_2009&action=edit 7] [http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/8_August_2009&action=edit 8] [http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/9_August_2009&action=edit 9]
[http://2009.igem.org/Team:Stanford/NotebookPage/10_August_2009 10] [http://2009.igem.org/Team:Stanford/NotebookPage/11_August_2009 11] [http://2009.igem.org/Team:Stanford/NotebookPage/12_August_2009 12] [http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/13_August_2009&action=edit 13] [http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/14_August_2009&action=edit 14] [http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/15_August_2009&action=edit 15] [http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/16_August_2009&action=edit 16]
[http://2009.igem.org/Team:Stanford/NotebookPage/17_August_2009 17] [http://2009.igem.org/Team:Stanford/NotebookPage/18_August_2009 18] [http://2009.igem.org/Team:Stanford/NotebookPage/19_August_2009 19] [http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/20_August_2009&action=edit 20] [http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/21_August_2009&action=edit 21] [http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/22_August_2009&action=edit 22] [http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/23_August_2009&action=edit 23]
[http://2009.igem.org/Team:Stanford/NotebookPage/24_August_2009 24] [http://2009.igem.org/Team:Stanford/NotebookPage/25_August_2009 25] [http://2009.igem.org/Team:Stanford/NotebookPage/26_August_2009 26] [http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/27_August_2009&action=edit 27] [http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/28_August_2009&action=edit 28] [http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/29_August_2009&action=edit 29] [http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/30_August_2009&action=edit 30]
[http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/31_August_2009&action=edit 31]
September
MTWTFSS
  [http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/1_September_2009&action=edit 1] [http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/2_September_2009&action=edit 2] [http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/3_September_2009&action=edit 3] [http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/4_September_2009&action=edit 4] [http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/5_September_2009&action=edit 5] [http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/6_September_2009&action=edit 6]
[http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/7_September_2009&action=edit 7] [http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/8_September_2009&action=edit 8] [http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/9_September_2009&action=edit 9] [http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/10_September_2009&action=edit 10] [http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/11_September_2009&action=edit 11] [http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/12_September_2009&action=edit 12] [http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/13_September_2009&action=edit 13]
[http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/14_September_2009&action=edit 14] [http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/15_September_2009&action=edit 15] [http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/16_September_2009&action=edit 16] [http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/17_September_2009&action=edit 17] [http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/18_September_2009&action=edit 18] [http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/19_September_2009&action=edit 19] [http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/20_September_2009&action=edit 20]
[http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/21_September_2009&action=edit 21] [http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/22_September_2009&action=edit 22] [http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/23_September_2009&action=edit 23] [http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/24_September_2009&action=edit 24] [http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/25_September_2009&action=edit 25] [http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/26_September_2009&action=edit 26] [http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/27_September_2009&action=edit 27]
[http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/28_September_2009&action=edit 28] [http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/29_September_2009&action=edit 29] [http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/30_September_2009&action=edit 30]
October
MTWTFSS
      [http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/1_October_2009&action=edit 1] [http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/2_October_2009&action=edit 2] [http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/3_October_2009&action=edit 3] [http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/4_October_2009&action=edit 4]
[http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/5_October_2009&action=edit 5] [http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/6_October_2009&action=edit 6] [http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/7_October_2009&action=edit 7] [http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/8_October_2009&action=edit 8] [http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/9_October_2009&action=edit 9] [http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/10_October_2009&action=edit 10] [http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/11_October_2009&action=edit 11]
[http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/12_October_2009&action=edit 12] [http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/13_October_2009&action=edit 13] [http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/14_October_2009&action=edit 14] [http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/15_October_2009&action=edit 15] [http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/16_October_2009&action=edit 16] [http://2009.igem.org/Team:Stanford/NotebookPage/17_October_2009 17] [http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/18_October_2009&action=edit 18]
[http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/19_October_2009&action=edit 19] [http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/20_October_2009&action=edit 20] [http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/21_October_2009&action=edit 21] [http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/22_October_2009&action=edit 22] [http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/23_October_2009&action=edit 23] [http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/24_October_2009&action=edit 24] [http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/25_October_2009&action=edit 25]
[http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/26_October_2009&action=edit 26] [http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/27_October_2009&action=edit 27] [http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/28_October_2009&action=edit 28] [http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/29_October_2009&action=edit 29] [http://2009.igem.org/Team:Stanford/NotebookPage/30_October_2009 30] [http://2009.igem.org/wiki/index.php?title=Team:Stanford/NotebookPage/31_October_2009&action=edit 31]

Daily Work

Goals

  • Morning:
    • vBOL tutorial polishing
    • purchase omnigraffle
    • possible wiki template work
  • Afternoon
    • Red papers for NO/SoxR affinity and Th-17 to NO pathway

Project / Accomplishments

  • Long review of entire cloning process
  • Learned to check sequences w/ Ape and order form (fwd and rev)
  • Broke down project steps
  • Finished new draft of presentation and went over it w/Jerome
    • Now contact physician and clinician
  • Finished vBOL presentation
  • Grew liquid cultures of B0015 and B0034, and part 53 and glycerol stock 9
  • Started ligation for 1.1b (device one, first round of cloning, part b)
    • Right cycle on PCR?


Problems

  • A little unsure about ligation protocol.... which PCR cycle? We chose ligation...

Alternative Solutions

Events

  • 3pm meeting w/ Jerome about updated presentation... Feedback
    • More clear about age groups- is this when it starts?
    • Why industrial countries targeted? Sterile environments....
    • Where does it take place?
    • Genetic component of the disease?
    • Mouse model of IBD to test linear relationship of Th-17 and Treg cells
    • Colon slide- show parts w/ larger picture and then transition into video by itself
      • Naive cd4+ cells do not show up in the video on the screen
      • Positive feedback between t-cells and differentiation of naive cd4+ cells
    • Trp analog levels
    • Device one diagram: sensor will end at SoxS, then generator is entire sequence
    • Constitutive export system..
      • Constitutively expressing everything besides il-6
    • Missing consistent background of T-cells... larger description of immunology and mediated immune cells
    • Simple, fun animation... like the french cartoons
    • Take out th1 and th2 cells in picture
    • th-17 to t-reg cells stemming from Immune System
      • Go straight to the problem
    • Explain T-cells- what do they do? Like a detector....
      • Signal another cell to kill the pathogen...
      • talk about the recruitment of b-cells
    • Cartoon is not a system level diagram
    • New system level diagram- simple but w/ external features like b-cells and dendritic cells
    • Also, upstream of inflammation and immunosuppression symbols in diagram... disease...
    • Reuse presentation diagrams
    • Missing level between box pictures and basic parts diagram
      • Maybe boxes such as SoxR/S system= NO sensor
    • Introduce vBOL later, but not too much time
    • suicide device?
    • schematics w. numbers/letters
    • Other questions... do people take RA for treatment? Il-6? Methyl tryptophans for IDO
      • Check out other uses for the products


  • From here
    • Contact clinician from here
    • Presentation works from here