Team:USTC Software/Project

From 2009.igem.org

(Difference between revisions)

Latest revision as of 16:04, 21 October 2009

About	Team and People	Project	Standard	Notebook	Demo	Safety	External Links

A First Introduction - Dr. Ding's One Summer

	Do you want to enjoy more sunshine rather than fail and fail again in lab? Do you want to design a biological system with computers rather than by thinking day and night? Do you want to have more reasonable plans rather than an uncertain one for your experiments?
Follow Dr. Ding, our ABCD will try to make your dreams come true. Wait!It would be much more efficient to get some general ideas about our ABCD firstly: Mathematical Model, Design Level, Design Type. Now, tell ABCD what you want. There are different ways for you to Input your desired dynamics to ABCD.
	Are there any restrictions on this biological network that happen to meet your needs? Good news! Dr. Ding will tell you how to complete this in ABCD.
Our ABCD engine starts working. The state of art algorithms we implement in ABCD will make design process automatically and different feasible solutions will be generated.
	How can you find real components to construct the system. Thanks to [http://partsregistry.org/Main_Page BioBricks]. Our database makes it possible to retrieve them while some new standards should be proposed. Also, if our memory serves right, there are quite a few brilliant software packages specified at BioBrick organizing and related management, for example, Clotho from Berkeley's dry team, 2008. If combined with these softwares, the construction will be even more applicable.
Now, you may feel happy to realize a function such as oscillation, perfect adaptation or bistability following our solutions. But we still hold earnest expectations. Is it possible to complete the fabrication automatically in the future?

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 <br />
-<font size = "5">A Tutorial - One Summer of Dr. Ding</font>
+<font size = "5">A First Introduction - Dr. Ding's One Summer</font>
 <br />
 <br />
 |-
-{|valign = "top" align = "center" border = "1" width = "800px"
+{|valign = "top" align = "center" border = "0" width = "800px"
 |-
 |align = "center" width = "400px"|
 [[Image:DBChe1.png|350x350px]]
-|align = ""|
+|align = "justify" cellspacing = "10"|
+<big>
+:*Do you want to enjoy more sunshine rather than fail and fail again in lab?
+:*Do you want to design a biological system with computers rather than by thinking day and night?
-Do you want to enjoy more sunshine rather than fail and fail again in lab?
+:*Do you want to have more reasonable plans rather than an uncertain one for your experiments?
-Do you want to design a biological system that exhibits dynamical behaviors you desire?
+</big>
-Do you want to try different ways to test your designs?
-Follow [https://2009.igem.org/User:dbche Dr. Ding], our ABCD will try to make your dreams come true.
-Wait a minute, it would be more efficient to get some general ideas about our ABCD: [https://2009.igem.org/Team:USTC_Software/hoWMMD Mathematical Model], [https://2009.igem.org/Team:USTC_Software/hoWDesign Design Level], [https://2009.igem.org/Team:USTC_Software/hoWDesign Design Type].
 |-
-|align = "center"|
+|align = "justify"|
+<big>
-Now, tell ABCD what you want. There are different ways for you to [https://2009.igem.org/Team:USTC_Software/hoWIO Input] your desired dynamics to ABCD.
+:*Follow [https://2007.igem.org/USTC/DingBo Dr. Ding], our ABCD will try to make your dreams come true.
+:*Wait!It would be much more efficient to get some general ideas about our ABCD firstly: [https://2009.igem.org/Team:USTC_Software/hoWMMD Mathematical Model], [https://2009.igem.org/Team:USTC_Software/hoWDesign#Design_Level Design Level], [https://2009.igem.org/Team:USTC_Software/hoWDesign#Design_Type_.28Sub_Level.29 Design Type].
+:*Now, tell ABCD what you want. There are different ways for you to [https://2009.igem.org/Team:USTC_Software/hoWIO Input] your desired dynamics to ABCD.
+</big>
 |align = "right"|
 [[Image:DBChe2.png|350x350px]]
@@ Line 31: / Line 35: @@
 |align = "left"|
 [[Image:DBChe3.png|350x350px]]
-|align = "center"|
+|align = "justify"|
+<big>
-Are there any [https://2009.igem.org/Team:USTC_Software/hoWRestriction restrictions] on this biological network to meet your needs? Dr. Ding will tell you how to complete this in ABCD?
+:*Are there any [https://2009.igem.org/Team:USTC_Software/hoWRestriction restrictions] on this biological network that happen to meet your needs? Good news! Dr. Ding will tell you how to complete this in ABCD.
+</big>
 |-
 |align = "left"|
+<big>
-Our ABCD engine starts working. The state of art [https://2009.igem.org/Team:USTC_Software/hoWAlgorithm Algorithms] we implement in ABCD will make design process automatically. Different feasible solutions will be generated.
+:*Our ABCD engine starts working. The state of art [https://2009.igem.org/Team:USTC_Software/hoWAlgorithm algorithms] we implement in ABCD will make design process automatically and different feasible solutions will be generated.
+</big>
 |align = "right"|
 [[Image:DBChe4.png|350x350px]]
@@ Line 45: / Line 49: @@
 |align = "left"|
 [[Image:DBChe5.png|350x350px]]
-|align = "center"|
+|align = "justify"|
+<big>
-How can you find real components to construct the system. Thanks to [http://partsregistry.org/Main_Page BioBricks]. Our [https://2009.igem.org/Team:USTC_Software/hoWDatabase database] makes possible to retrieve that.
+:*How can you find real components to construct the system. Thanks to [http://partsregistry.org/Main_Page BioBricks]. Our [https://2009.igem.org/Team:USTC_Software/hoWDatabase database] makes it possible to retrieve them while some new standards should be proposed.
+:*Also, if our memory serves right, there are quite a few brilliant software packages specified at BioBrick organizing and related management, for example, [https://2008.igem.org/Team:UC_Berkeley_Tools Clotho] from Berkeley's dry team, 2008. If combined with these softwares, the construction will be even more applicable.
+</big>
 |-
-|align = "center"|
+|align = "justify"|
+<big>
-[https://2009.igem.org/Team:USTC_Software/Perspective Future Plan]
+:*Now, you may feel happy to realize a function such as [https://2009.igem.org/Team:USTC_Software/WhatDemo#Example_1._Synthetic_Oscillator oscillation], [https://2009.igem.org/Team:USTC_Software/WhatDemo#Example_2:_Perfect_Adaptation perfect adaptation] or  [https://2009.igem.org/Team:USTC_Software/WhatDemo#Example_3._Bistable_Toggle_Switch bistability] following our solutions. But we still hold earnest expectations. Is it possible to complete the fabrication automatically in the [https://2009.igem.org/Team:USTC_Software/When future]?
+</big>
 |align = "right"|
 [[Image:DBChe6.png|350x350px]]
 |}
 |}
 {{USTCSW_Foot}}