Team:Tokyo-Nokogen/Project

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<th scope="row"><a href="https://2009.igem.org/Team:Tokyo-Nokogen" onMouseOut="MM_swapImgRestore()" onMouseOver="MM_swapImage('Image6','','https://static.igem.org/mediawiki/2009/e/e6/Home2.png',1)"><div align="center"><img src="https://static.igem.org/mediawiki/2009/4/41/Home3.png" alt="" name="Image6" width="100" height="35" border="0"></div></th>
         
         
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<td><a href="https://2009.igem.org/Team:Tokyo-Nokogen/Project" onMouseOut="MM_swapImgRestore()" onMouseOver="MM_swapImage('Image8','','https://static.igem.org/mediawiki/2009/f/f9/Project2.png',1)"><div align="center"><img src="https://static.igem.org/mediawiki/2009/9/9d/Project3.png" alt="" name="Image8" width="120" height="35" border="0"></div></td>
         
         
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<td><a href="https://2009.igem.org/Team:Tokyo-Nokogen/Members" onMouseOut="MM_swapImgRestore()" onMouseOver="MM_swapImage('Image10','','https://static.igem.org/mediawiki/2009/a/a6/Members2.png',1)"><img src="https://static.igem.org/mediawiki/2009/a/aa/Members3.png" alt="" name="Image10" width="120" height="35" border="0" align="middle" style="margin-left:10px">
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<th scope="row"><a href="https://2009.igem.org/Team:Tokyo-Nokogen/Parts"
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<td><a href="https://2009.igem.org/Team:Tokyo-Nokogen/notebook" onMouseOut="MM_swapImgRestore()" onMouseOver="MM_swapImage('Image14','','https://static.igem.org/mediawiki/2009/b/bd/Notebook2.png',1)"><img src="https://static.igem.org/mediawiki/2009/0/0b/Notebook3.png" alt="" name="Image14" width="130" height="35" border="0" align="middle" style="margin-left:10px"></div></a></td>
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<td><a href="https://2009.igem.org/Team:Tokyo-Nokogen/notebook" onMouseOut="MM_swapImgRestore()"onMouseOver="MM_swapImage('Image14','','https://static.igem.org/mediawiki/2009/b/bd/Notebook2.png',1)"><div align="center"><img src="https://static.igem.org/mediawiki/2009/0/0b/Notebook3.png" alt="" name="Image14" width="130" height="35" border="0"></div></td>
         
         
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<td>&nbsp;</td>
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<td><a href="https://2009.igem.org/Team:Tokyo-Nokogen/Safety" onMouseOut="MM_swapImgRestore()"onMouseOver="MM_swapImage('Image14','','https://static.igem.org/mediawiki/2009/b/bd/Notebook2.png',1)"><div align="center"><img src="https://static.igem.org/mediawiki/2009/e/eb/Safety3.png" alt="" name="Image14" width="110" height="35" border="0"></div></td>
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<img src="https://static.igem.org/mediawiki/2009/5/59/Overview.png" style="margin-left:45px"><div style="margin-left:45px; margin-right:15px">
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We belong to the Department of Biotechnology at Tokyo University of Agriculture and Technology (TUAT) in Japan. Our team comprises ten  undergraduate students, four instructors and an advisor. This is the  first time for us to take participate in iGEM. Prof. Sode informed us  about iGEM competition, and we girded up our loins to build  'Tokyo-NokoGen'. All the members have a great deal of interest in  synthetic biology although we don't major in synthetic biology.Trying  to achieve the goal of our project, we would like to realize how  wonderful synthetic biology is. It is attractive for us because  synthetic biology is capable of unrestricted design and construction of  a novel biological system by bottom-up approach starting from almost  nothing, different from "genetic engineering" that is our major. We think it is essential to unify biotechnology with other research fields  such as system engineering, mathematics and bioinformatics because the biological system is so complicated. This correlation of different  fields of study is what we aim to do in our department of Biotechnology  in TUAT.We are glad to have a precious experience to learn how to  develop our project. In this year, we will corporate with NYMU-Taipei  at National Yang Ming University in Taiwan. We have already had a first  live meeting and gotten to know each other. From now on, we would like  to compete with each other and construct attractive genetically  engineered machine.With renewed dreams and hope, we have started our projects ! </th></div>
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<h3><p style="margin-left:50px; margin-right:50px"> The production of recombinant protein is an important step to many experiments. Unfortunately, procedures can often be quite laborious and annoying (e.g., centrifugation, sonication,…). Our goal is to use synthetic biology to provide an easy solution. We named our system the <I>Escherichia coli</I> auto protein synthesizer (ESCAPES). It takes advantage of four concepts: 1) light switches, 2) cellular self-aggregation, 3) autolysis, and 4) transcriptional signal counter. Click on the labels in the figure below for further details. With our ESCAPES system, we would only need to irradiate the cells twice to produce a crude extract of our target protein.
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<a href="https://2009.igem.org/Team:Tokyo-Nokogen/Project/Lysis"><p style="text-indent: 33em"><img src="https://static.igem.org/mediawiki/2009/f/fb/Paper2.png" width="160" height="74" border="0">
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<p style="margin-left:50px; margin-right:50px"> The first induction with green light induces the expression of antigen 43, which causes the <I>E.coli</I> to self-aggregate and settle to the bottom. The medium is then decanted and replaced with a small volume of buffer. The aggregated cells are once again irradiated with green light, inducing the expression of holin and endolysin, which causes the autolysis of the bacterial cells. ESCAPES will allow us to escape from the annoying centrifugation and lysis steps, to conveniently produce crude extracts of our target protein.
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Latest revision as of 03:57, 22 October 2009






The production of recombinant protein is an important step to many experiments. Unfortunately, procedures can often be quite laborious and annoying (e.g., centrifugation, sonication,…). Our goal is to use synthetic biology to provide an easy solution. We named our system the Escherichia coli auto protein synthesizer (ESCAPES). It takes advantage of four concepts: 1) light switches, 2) cellular self-aggregation, 3) autolysis, and 4) transcriptional signal counter. Click on the labels in the figure below for further details. With our ESCAPES system, we would only need to irradiate the cells twice to produce a crude extract of our target protein.



















The first induction with green light induces the expression of antigen 43, which causes the E.coli to self-aggregate and settle to the bottom. The medium is then decanted and replaced with a small volume of buffer. The aggregated cells are once again irradiated with green light, inducing the expression of holin and endolysin, which causes the autolysis of the bacterial cells. ESCAPES will allow us to escape from the annoying centrifugation and lysis steps, to conveniently produce crude extracts of our target protein.



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