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Team:KULeuven/Modeling/Kinetic Constants
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== E. coli Transcription rates == | == E. coli Transcription rates == | ||
| + | Using the test data on constitutive promotors on the parts registry, we estimated the transcription rate of these promotors. The transcription rate of {{kulpart|BBa_J23105}} was estimated from the data in reference [1]. The transcription rates of the other constitutive promotors were scaled according to the table in the parts registry. | ||
[[Image:Transcription_rate.png|400px|thumb|center]] | [[Image:Transcription_rate.png|400px|thumb|center]] | ||
| - | [[image:dilbert_param.strip.gif|600px]] | + | |
| + | [1] M. Bon, S.J. McGowan, and P.R. Cook, “Many expressed genes in bacteria and yeast are transcribed only once per cell cycle,” FASEB J., vol. 20, Aug. 2006, pp. 1721-1723.<br> | ||
| + | [2] http://partsregistry.org/wiki/index.php?title=Part:BBa_J23100 | ||
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| + | == E. coli Translation rates == | ||
| + | Last year they estimated the translation rate for {{kulpart|BBa_B0034}}. Some other translation rates were scaled according to the table in the parts registry assuming the relation is linear. | ||
| + | [[Image:Translation_rate.png|400px|thumb|center]] | ||
| + | |||
| + | [1] http://www.partsregistry.org/Ribosome_Binding_Sites/Prokaryotic/Constitutive/Community_Collection <br> | ||
| + | [2] "KULeuven Kinetic Constants iGEM2008" https://2008.igem.org/Team:KULeuven/Model/KineticConstants | ||
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| + | |||
| + | |||
| + | |||
| + | [[image:dilbert_param.strip.gif|600px|center]] | ||
Latest revision as of 08:51, 2 September 2009
E. coli Transcription rates
Using the test data on constitutive promotors on the parts registry, we estimated the transcription rate of these promotors. The transcription rate of was estimated from the data in reference [1]. The transcription rates of the other constitutive promotors were scaled according to the table in the parts registry.
[1] M. Bon, S.J. McGowan, and P.R. Cook, “Many expressed genes in bacteria and yeast are transcribed only once per cell cycle,” FASEB J., vol. 20, Aug. 2006, pp. 1721-1723.
[2] http://partsregistry.org/wiki/index.php?title=Part:BBa_J23100
E. coli Translation rates
Last year they estimated the translation rate for . Some other translation rates were scaled according to the table in the parts registry assuming the relation is linear.
[1] http://www.partsregistry.org/Ribosome_Binding_Sites/Prokaryotic/Constitutive/Community_Collection
[2] "KULeuven Kinetic Constants iGEM2008" https://2008.igem.org/Team:KULeuven/Model/KineticConstants
