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Team:Warsaw/Calendar-Main/15 April 2009
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{{WarNotebook}} | {{WarNotebook}} | ||
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| - | <br/> | + | <html><br/> |
| - | <h3> | + | <h3>Cloning of the mgtc promoter into the pKSII+ plasmid</h3> |
| - | <h4>Kamil | + | <h4><font color="black">Kamil</font></h4> |
| + | <br /> | ||
<p>Tasks:</p> | <p>Tasks:</p> | ||
<ul> | <ul> | ||
<li>Amplification of mgtc and hly</li> | <li>Amplification of mgtc and hly</li> | ||
</ul> | </ul> | ||
| + | <br /> | ||
<p>Methods:</p> | <p>Methods:</p> | ||
<ul> | <ul> | ||
| - | <li><p>PCR mixture's composition:</p> 2ul buffer | + | <li><p>PCR mixture's composition:</p> |
| + | <pre> | ||
| + | 2ul buffer | ||
| + | 1ul MgCl2 | ||
| + | 0,5ul primers | ||
| + | 1,5ul dNTPs (10 mM) | ||
| + | 01,ul polymerase | ||
| + | </pre> | ||
| + | <p>Solution was topped up with H2O to 20ul.</p> | ||
<p>2 repeats of every sample were made.</p> | <p>2 repeats of every sample were made.</p> | ||
| - | + | </li> | |
| - | + | ||
</ul> | </ul> | ||
<ul> | <ul> | ||
| - | <li>PCR | + | <li>PCR programs:</li> |
| - | <p> | + | <p>mgtc</p><pre align="left">90s 95°C <br/> (30s 95°C, 35s 48°C, 60s 72°C)x2 <br/> (30s 95°C, 35s 58°C, 60s 72°C)x28 <br/> 600s 72°C <br/> ~ 4°C</pre> |
| - | <p> | + | <p>hly</p><pre align="left">90s 95°C <br/> (30s 95°C, 35s 42°C, 150s 72°C)x2 <br/> (30s 95°C, 35s 47°C, 150s 72°C)x28 <br/> 600s 72°C <br/> ~ 10°C</pre> |
</ul> | </ul> | ||
<ul> | <ul> | ||
<li>Electrophoretic separation on 1% agarose gel</li> | <li>Electrophoretic separation on 1% agarose gel</li> | ||
</ul> | </ul> | ||
| + | <br /> | ||
<p>Results:</p> | <p>Results:</p> | ||
| - | https://static.igem.org/mediawiki/2009/ | + | <img src="https://static.igem.org/mediawiki/2009/7/70/2009.04.15_-_PCR_mgtc_i_hly_opisane.jpg"/> |
<var> | <var> | ||
| - | < | + | <ul> |
| + | <li>Gel (from left)</li> | ||
| + | </ul> | ||
<ol> | <ol> | ||
<li>GeneRuler DNA Ladder Mix #SM0333 (Fermentas)</li> | <li>GeneRuler DNA Ladder Mix #SM0333 (Fermentas)</li> | ||
<li>mgtc 1 repeat</li> | <li>mgtc 1 repeat</li> | ||
<li>mgtc 2 repeat</li> | <li>mgtc 2 repeat</li> | ||
| - | <li>mgtc | + | <li>mgtc control -</li> |
<li>hly 1 repeat</li> | <li>hly 1 repeat</li> | ||
<li>hly 2 repeat</li> | <li>hly 2 repeat</li> | ||
| - | <li>hly | + | <li>hly control -</li> |
</ol> | </ol> | ||
</var> | </var> | ||
| + | <br /> | ||
<p>Notes:</p> | <p>Notes:</p> | ||
| - | < | + | <ul> |
| - | < | + | <li>Inappropriate template DNA was used for mgtc (ganomic DNA from Yersinia instead of genomic DNA from Listeria).</li> |
| - | + | </ul> | |
| + | <br /> | ||
| + | </html> | ||
Latest revision as of 14:41, 17 September 2009
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Cloning of the mgtc promoter into the pKSII+ plasmid
Kamil
Tasks:
- Amplification of mgtc and hly
Methods:
PCR mixture's composition:
2ul buffer 1ul MgCl2 0,5ul primers 1,5ul dNTPs (10 mM) 01,ul polymerase
Solution was topped up with H2O to 20ul.
2 repeats of every sample were made.
- PCR programs:
mgtc
90s 95°C
(30s 95°C, 35s 48°C, 60s 72°C)x2
(30s 95°C, 35s 58°C, 60s 72°C)x28
600s 72°C
~ 4°C
hly
90s 95°C
(30s 95°C, 35s 42°C, 150s 72°C)x2
(30s 95°C, 35s 47°C, 150s 72°C)x28
600s 72°C
~ 10°C
- Electrophoretic separation on 1% agarose gel
Results:
- Gel (from left)
- GeneRuler DNA Ladder Mix #SM0333 (Fermentas)
- mgtc 1 repeat
- mgtc 2 repeat
- mgtc control -
- hly 1 repeat
- hly 2 repeat
- hly control -
Notes:
- Inappropriate template DNA was used for mgtc (ganomic DNA from Yersinia instead of genomic DNA from Listeria).
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