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Team:Alberta/Project/Modeling/start
From 2009.igem.org
(Difference between revisions)
(New page: %start changeCobraSolver('glpk'); model = readCbModel() %('Ec_iAF1260_flux1.xml') solution1 = optimizeCbModel(model, 'max', 'false', 'false'); essgenes=cell(1) fValue = solution1.f ...) |
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| Line 1: | Line 1: | ||
| - | %start | + | % start script |
| - | changeCobraSolver('glpk'); | + | |
| + | changeCobraSolver('glpk'); %can use any solver that is supported | ||
model = readCbModel() %('Ec_iAF1260_flux1.xml') | model = readCbModel() %('Ec_iAF1260_flux1.xml') | ||
| - | solution1 = optimizeCbModel(model, 'max', 'false', 'false'); | + | solution1 = optimizeCbModel(model, 'max', 'false', 'false'); |
essgenes=cell(1) | essgenes=cell(1) | ||
| - | + | InitialGrowthRate = solution1.f | |
| - | + | ||
Latest revision as of 00:23, 18 October 2009
% start script
changeCobraSolver('glpk'); %can use any solver that is supported
model = readCbModel() %('Ec_iAF1260_flux1.xml')
solution1 = optimizeCbModel(model, 'max', 'false', 'false');
essgenes=cell(1)
InitialGrowthRate = solution1.f
