Team:UNIPV-Pavia/Software

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     <font face="Pristina" size="50"><b>SequenceAlignment</b></font><br><br><br>
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We developed this tool to speed up the quality control of the sequences result of sequencing operation.  
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We developed this tool to speed up the quality control of the assembled BioBricks.  
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It’s a Matlab graphics interface that allows you to align your sequences with simulated ones, built up assembling simple parts (BioBricks) according to the rules of Standard Assembly (modality of use Compare Sequence/BioBrick).
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It’s a Matlab graphics interface that allows you to align the results of the sequencing procedures with expected sequences, built up assembling simple parts (BioBricks) according to the rules of Standard Assembly (modality of use Compare Sequence/BioBrick).
It offers also the possibility of simply align two sequences (modality of use Compare
It offers also the possibility of simply align two sequences (modality of use Compare
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two Sequences ).
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two Sequences).
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Sequence Alignment executable files for Windows platforms can be downloaded free of charge for non-profit institutions from the following web site:
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SequenceAlignment executable files for Windows platforms and the relative <html><a href="http://aimed11.unipv.it/SequenceAlignment/example.pdf" target="_blank">User's Guide</a></html> can be downloaded free of charge for non-profit institutions from the following web site:
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[http://aimed11.unipv.it/SequenceAlignment| Download Sequence Alignment].
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<html><a href="http://aimed11.unipv.it/SequenceAlignment" target="_blank">Download SequenceAlignment</a></html>.
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[[Image:Unipv_compareSB_main.png |500px|Modality of use Compare Sequence/BioBrick|thumb|center|Modality of use Compare Sequence/BioBrick]]
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[[Image:unipv_Compare2seq.png |500px|Modality of use Compare two Sequences|thumb|center|Modality of use Compare two Sequences]]
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[[Image:unipv_Compare2seq_funz.png |500px|Modality of use Compare Sequence/BioBrick|thumb|center|Modality of use Compare Sequence/BioBrick at work]]
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[[Image:Unipv_Report.png |500px|Modality of use Compare Sequence/BioBrick|thumb|center|An example of Report (modality of use Compare Sequence/BioBrick)]]
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[[Image:unipv_Compare2seq.png |300px|Modality of use Compare two sequences|thumb|Modality of use Compare two sequences]]
 
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Latest revision as of 23:13, 19 October 2009

EthanolPVanimation.gif



SequenceAlignment


We developed this tool to speed up the quality control of the assembled BioBricks. It’s a Matlab graphics interface that allows you to align the results of the sequencing procedures with expected sequences, built up assembling simple parts (BioBricks) according to the rules of Standard Assembly (modality of use Compare Sequence/BioBrick). It offers also the possibility of simply align two sequences (modality of use Compare two Sequences).

SequenceAlignment executable files for Windows platforms and the relative User's Guide can be downloaded free of charge for non-profit institutions from the following web site: Download SequenceAlignment.


Modality of use Compare Sequence/BioBrick


Modality of use Compare two Sequences


Modality of use Compare Sequence/BioBrick at work


An example of Report (modality of use Compare Sequence/BioBrick)