Team:Harvard/References

From 2009.igem.org

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<h2> refs </h2>
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<h2> References </h2>
 +
 
 +
 
 +
Abbott, Derek A.  Suir, Erwin.  Van Maris, Antonius J.A.  Pronk, Jack T.  “Physiological and Transcriptional Responses to High Concentrations of Lactic Acid in Anaerobic Chemostat Cultures of Saccharomyces cerevisiae.”  Applied and Environmental Microbiology 74.18 (2008): 5759-5768
 +
<br><br>
 +
Balmer, Andrew & Martin, Paul.  “Synthetic Biology: Social and Ethical Challenges.”  BBSRC (2008)
 +
<br><br>
 +
 
 +
Beale, Samuel I.  Cornejo, Juan.  “15,16-DIHYDROBILIVERDIN IXa IS A PARTIALLY REDUCED INTERMEDIATE IN THE FORMATION OF PHYCOBILINS FROM BILIVERDIN IXa.”  The Journal of Biological Chemistry 226.33 (1991): 22341-22345
 +
<br><br>
 +
 
 +
Beale, Samuel I.  Cornejo, Juan.  “(3(Z)-PHYCOERYTHROBILIN AND 3(Z)-PHYCOCYANOBILIN ARE INTERMEDIATES IN THE FORMATION OF 3(E)-PHYCOCYANOBILIN FROM BILIVERDIN IXa.”  The Journal of Biological Chemistry 226.33 (1991): 22333-22340
 +
<br><br>
 +
 
 +
Binkowksi, Brock.  Fan, Frank.  Wood, Keith.  “Engineered luciferases for molecular sensing in living cells.”  Current Opinion in Biotechnology 20 (2009): 14-18
 +
<br><br>
 +
 
 +
Boucher, Nathalie.  Wu, Ying.  Dumas, Carole.  Dube, Marthe.  Sereno, Denis.  Breton, Marie.  Papadopoulou, Barbara.  “A Common Mechanism of Stage-regulated Gene Expression in Leishmania Mediated by a Conserved 3’-Untrasnlated Region Element.”  The Journal of Biological Chemistry 277.22 (2002): 19511-19520
 +
<br><br>
 +
 
 +
Branchini, Bruce R.  Southworth, Tara L.  Khattak, Neelum F.  Michelini, Elisa.  Roda, Aldo.  “Red- and green-emitting firefly luciferase mutants for bioluminescent reporter applications.”  Analytical Biochemistry 345 (2005): 140-148
 +
<br><br>
 +
 
 +
Casal, Jorge J.  Cerdan, Pablo D.  Staneloni, Roberto J.  Cattaneo, Laura.  “Different Phototransduction Kinetics of Phytochrome A and Phytochrome B in Arabidopsis thaliana.”  Plant Physiol 116 (1998): 1533-1538
 +
<br><br>
 +
 
 +
Craig, Frank F.  Simmonds, Adrian C.  Watmore, David.  McCapra, Frank.  White, Michael R.H.  “Membrane-permeable luciferin esters for assay of firefly luciferase in live intact cells.”  Biochem. J..  276 (1991): 637-641
 +
<br><br>
 +
 
 +
Gambetta, Gregory a.  Lagarias, J. Clark.  “Genetic engineering of phytochrome biosynthesis in bacteria.”  PNAS 98.19 (2001): 10566-10571
 +
<br><br>
 +
 
 +
Gambhir, Sanjiv S.  Paulmurugan, Ramasamy. “Combinatorial Library Screening for Developing an Improved Split-Firefly Luciferase Fragment-Assisted Complementation System for Studying Protein-Protein Interactions.”  Anal. Chem. 79 (2007): 2346-2353
 +
<br><br>
 +
 
 +
Gambhir, Sanjiv S.  Paulmurugan, Ramasamy.  “Firefly Luciferase Enzyme Fragment Complementation for Imaging in Cells and Living Animals.”  Anal. Chem. 77 (2005): 1295-1302
 +
<br><br>
 +
 
 +
Gould, Stephen J.  Keller, Gilbert-Andre.  Hosken, Nancy.  Wilkinson, Jack.  Subramani, Suresh.  “A Converved Tripeptide Sorts Proteins to Peroxisomes.”  The Journal of Cell Biology 108 (1989): 1657-1664
 +
<br><br>
 +
 
 +
Hawkins, Kristy M.  Smolke, Christina, D.  “Production of benzylisoquinoline alkaloids in Saacharomyces cerevisiae.”  Nature Chemical Biology 4.9 (2008) : 564-573
 +
<br><br>
 +
 
 +
Hierro, Aitor.  Sun, Ji.  Rusnak, Alexander S.  Jim, Jaewon.  Prag, Gali.  Emr, Scott D.  Hurley, James H.  “Structure of the ESCRT-II endosomal trafficking complex.”  Nature421 (2004): 221-225
 +
<br><br>
 +
 
 +
Kramer, Elena M.  Holappa, Lynn.  Gould, Billie.  Jaramillo, M. Alejandra.  Setnikov, Dimitriy.  Santiago, Philip M.  “Elaboration of B Gene Fucntion to Include the Identity of Novel Floral Organs in the Lower Eudicot Aquilegia.”  The Plant Cell 19 (2007): 750-766
 +
<br><br>
 +
 
 +
Leskinen, P.  Virta, M.  Karp, M.  “One-step measurement of firefly luciferase activity in yeast.”  Wiley InterScience 20 (2003): 1109-1113
 +
<br><br>
 +
 
 +
Leung, Daisy W.  Otomo, Chinatsu.  Chory, Joanne.  Rosen, Michael K.  “Genetically encoded photoswitching of actin assembly through the Cdc42-WASP-Arp2/3 complex pathway.”  PNAS 105.35 (2008): 12797-12802
 +
<br><br>
 +
 
 +
Luker, Kathryn E.  Smith, Matthew C.P.  Luker, Gary D.  Gammon, Seth T.  Piwnica-Worms, Helen.  Piwinica-Worms, David.  “Kinetics of regulated protein-protein interactions revealed with firefly luciferase complementation imaging in cells and living animals.”  PNAS 101.33 (2004): 12288-12293
 +
<br><br>
 +
 
 +
Michnick, Stephen W.  Ear, Po Hien.  Manderson, Emily N.  Remy, Ingrid.  Stefan, Eduard.  “Universal strategies in research and drug discovery based on protein-fragment complementation assays.”  Nature Reviews 6 (2007): 569-582
 +
<br><br>
 +
 
 +
Phee, Bong-Kwan.  Kim, Jeong-Il.  Shin, Dong Ho.  Yoo, Jihye.  Park, Kyoung-Jin.  Han, Yun-Jeong.  Kwon, Yong-Kook.  Cho, Man-Ho.  Jeon, Jong-Seong.  Bhoo, Seong Hee.  Hahn, Tae-Ryong.  “A novel protein phosphatase indirectly regulates phytochrome-interacting factor 3 via phytochrome.”  Biochem. J. 415 (2008): 247-255
 +
<br><br>
 +
 
 +
Quail, Peter h.  “Phytochrome Photosensory Signalling Networks.”  Nature Reviews 3 (2002): 85-93
 +
<br><br>
 +
 
 +
Smith, Harry. Xu, Yong.  Quail, Peter H.  “Antagonistic but Complementary Actions of Phytochromes A and B Allow Optimum Seedling De-Etiolation.”  Plant Physiol 114 (1997): 637-641
 +
<br><br>
 +
 
 +
Shimizu-Sato, Sae.  Huq, Enamul.  Tepperman, James M.  Quail, Peter H.  “A light-switchable gene promoter system.”  Nature Publishing Group 20 (2002)
 +
<br><br>
 +
 
 +
Short, Timothy W.  “Overexpression of Arabidopsis Phytochrome B Inhibits Phytochrome A Function in the Presence of Sucrose.”  Plant Physiology 119 (1999): 1497-1505
 +
<br><br>
 +
 
 +
Smith, Harry.  “Phytochromes and light signal perception by plants – an emerging synthesis.”  Nature 407 (2000): 585-291
 +
<br><br>
 +
 
 +
Stearman, Robert.  Dancis, Andrew.  Klausner, Richard D.  “YIpDCE1 – an intergrating plasmid for dual constitutive expression in yeast.”  Gene 212 (1998): 197-202
 +
<br><br>
 +
 
 +
Subramanian, Chitra.  Woo, Jongchan.  Cai, Xue.  Xu, Xiaodong.  Servick, Stein.  Johnson, Carl H.  Nebenfuhr, Andreas.  Von Arnim, Albrecht G.  “A suite of tools and application notes for in vivo protein interaction assays using bioluminescence resonance energy transfer (BRET).”  The Plant Journal 48  (2006): 138-152
 +
<br><br>
 +
 
 +
Tan, Song.  “A Modular Polycistronic Expression System for Overexpressing Protein Complexes in Escherichia coli.”  Protein Expression and Purification 21 (2001): 224-234
 +
<br><br>
 +
 
 +
Terry, Matthew J.  Maines, Mahin D.  Lagarias, J. Clark.  “Inactivation of Phytochrome- and Phycobiliprotein-Chromophore Precursors by Rat Liver Biliverdin Reductase.”  The Journal of Biological Chemistry.  35 (1993): 26099-26106
 +
<br><br>
 +
 
 +
Tyszkiewicz, Amy B.  Muir, Tom W.  “Activation of protein splicing with light in yeast.”  Nature Methods 5.4 (2008): 303-305
 +
<br><br>
 +
 
 +
Weller, James L.  Terry, Matthew J.  Rameau, Catherine.  Reid, James B.  Kendrick, Richard E.  “The Phytochrome-Deficient pcd1 Mutant of Pea is Unable to Convert Heme to Biliverdin IXa.”  The Plant Cell 8 (1996): 55-67
 +
<br><br>
 +
 
 +
Villalobos, Victor.  Naik, Snehal.  Piwnica-Worms, David.  “Detection of Protein-Protein Interactions in Live Cells and Animals with Split Firefly Luciferase Protein Fragment Complementation.”  Methods in Molecular Biology 439.
 +
 
 +
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     <ul>
     <ul>
       <li><a href="https://2009.igem.org/Team:Harvard/Comm">Bacteria-to-Yeast Communication</a></li>
       <li><a href="https://2009.igem.org/Team:Harvard/Comm">Bacteria-to-Yeast Communication</a></li>
-
       <li><a href="https://2009.igem.org/Team:Harvard/Laser">Laser-petter</a></li>
+
       <li><a href="https://2009.igem.org/Team:Harvard/Laser">Characterization</a></li>
       <li><a href="https://2009.igem.org/Team:Harvard/PCB">PCB Biosynthesis in Yeast</a></li>
       <li><a href="https://2009.igem.org/Team:Harvard/PCB">PCB Biosynthesis in Yeast</a></li>
       <li><a href="https://2009.igem.org/Team:Harvard/Split">Split Luciferase</a></li>
       <li><a href="https://2009.igem.org/Team:Harvard/Split">Split Luciferase</a></li>
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       <li><a href="https://2009.igem.org/Team:Harvard/Blackboard">Yeast Cellular Blackboard</a></li>
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       <li><a href="https://2009.igem.org/Team:Harvard/Blackboard">Other Possible Reporters</a></li>
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      <li><a href="https://2009.igem.org/Team:Harvard/Mating">Yeast Red Light District</a></li>
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    </ul>
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  </ul>
<h2><p><a href="https://2009.igem.org/Team:Harvard/Parts">Parts</a></p></h2>
<h2><p><a href="https://2009.igem.org/Team:Harvard/Parts">Parts</a></p></h2>
         <h2><p><a href="https://2009.igem.org/Team:Harvard/References">References</a></p></h2>
         <h2><p><a href="https://2009.igem.org/Team:Harvard/References">References</a></p></h2>
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     </ul>
     </ul>
<h2><p><a href="https://2009.igem.org/Team:Harvard/Ethics">Ethics</a></h2>
<h2><p><a href="https://2009.igem.org/Team:Harvard/Ethics">Ethics</a></h2>
 +
        <h2><p><a href="https://2009.igem.org/Team:Harvard/Safety">Safety</a></h2>
 +
        <h2><p><a href="https://2009.igem.org/Team:Harvard/Acknowledgements">Acknowledgements</a></h2>
</td>
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Latest revision as of 03:41, 22 October 2009

Hi Mom

References

Abbott, Derek A. Suir, Erwin. Van Maris, Antonius J.A. Pronk, Jack T. “Physiological and Transcriptional Responses to High Concentrations of Lactic Acid in Anaerobic Chemostat Cultures of Saccharomyces cerevisiae.” Applied and Environmental Microbiology 74.18 (2008): 5759-5768

Balmer, Andrew & Martin, Paul. “Synthetic Biology: Social and Ethical Challenges.” BBSRC (2008)

Beale, Samuel I. Cornejo, Juan. “15,16-DIHYDROBILIVERDIN IXa IS A PARTIALLY REDUCED INTERMEDIATE IN THE FORMATION OF PHYCOBILINS FROM BILIVERDIN IXa.” The Journal of Biological Chemistry 226.33 (1991): 22341-22345

Beale, Samuel I. Cornejo, Juan. “(3(Z)-PHYCOERYTHROBILIN AND 3(Z)-PHYCOCYANOBILIN ARE INTERMEDIATES IN THE FORMATION OF 3(E)-PHYCOCYANOBILIN FROM BILIVERDIN IXa.” The Journal of Biological Chemistry 226.33 (1991): 22333-22340

Binkowksi, Brock. Fan, Frank. Wood, Keith. “Engineered luciferases for molecular sensing in living cells.” Current Opinion in Biotechnology 20 (2009): 14-18

Boucher, Nathalie. Wu, Ying. Dumas, Carole. Dube, Marthe. Sereno, Denis. Breton, Marie. Papadopoulou, Barbara. “A Common Mechanism of Stage-regulated Gene Expression in Leishmania Mediated by a Conserved 3’-Untrasnlated Region Element.” The Journal of Biological Chemistry 277.22 (2002): 19511-19520

Branchini, Bruce R. Southworth, Tara L. Khattak, Neelum F. Michelini, Elisa. Roda, Aldo. “Red- and green-emitting firefly luciferase mutants for bioluminescent reporter applications.” Analytical Biochemistry 345 (2005): 140-148

Casal, Jorge J. Cerdan, Pablo D. Staneloni, Roberto J. Cattaneo, Laura. “Different Phototransduction Kinetics of Phytochrome A and Phytochrome B in Arabidopsis thaliana.” Plant Physiol 116 (1998): 1533-1538

Craig, Frank F. Simmonds, Adrian C. Watmore, David. McCapra, Frank. White, Michael R.H. “Membrane-permeable luciferin esters for assay of firefly luciferase in live intact cells.” Biochem. J.. 276 (1991): 637-641

Gambetta, Gregory a. Lagarias, J. Clark. “Genetic engineering of phytochrome biosynthesis in bacteria.” PNAS 98.19 (2001): 10566-10571

Gambhir, Sanjiv S. Paulmurugan, Ramasamy. “Combinatorial Library Screening for Developing an Improved Split-Firefly Luciferase Fragment-Assisted Complementation System for Studying Protein-Protein Interactions.” Anal. Chem. 79 (2007): 2346-2353

Gambhir, Sanjiv S. Paulmurugan, Ramasamy. “Firefly Luciferase Enzyme Fragment Complementation for Imaging in Cells and Living Animals.” Anal. Chem. 77 (2005): 1295-1302

Gould, Stephen J. Keller, Gilbert-Andre. Hosken, Nancy. Wilkinson, Jack. Subramani, Suresh. “A Converved Tripeptide Sorts Proteins to Peroxisomes.” The Journal of Cell Biology 108 (1989): 1657-1664

Hawkins, Kristy M. Smolke, Christina, D. “Production of benzylisoquinoline alkaloids in Saacharomyces cerevisiae.” Nature Chemical Biology 4.9 (2008) : 564-573

Hierro, Aitor. Sun, Ji. Rusnak, Alexander S. Jim, Jaewon. Prag, Gali. Emr, Scott D. Hurley, James H. “Structure of the ESCRT-II endosomal trafficking complex.” Nature421 (2004): 221-225

Kramer, Elena M. Holappa, Lynn. Gould, Billie. Jaramillo, M. Alejandra. Setnikov, Dimitriy. Santiago, Philip M. “Elaboration of B Gene Fucntion to Include the Identity of Novel Floral Organs in the Lower Eudicot Aquilegia.” The Plant Cell 19 (2007): 750-766

Leskinen, P. Virta, M. Karp, M. “One-step measurement of firefly luciferase activity in yeast.” Wiley InterScience 20 (2003): 1109-1113

Leung, Daisy W. Otomo, Chinatsu. Chory, Joanne. Rosen, Michael K. “Genetically encoded photoswitching of actin assembly through the Cdc42-WASP-Arp2/3 complex pathway.” PNAS 105.35 (2008): 12797-12802

Luker, Kathryn E. Smith, Matthew C.P. Luker, Gary D. Gammon, Seth T. Piwnica-Worms, Helen. Piwinica-Worms, David. “Kinetics of regulated protein-protein interactions revealed with firefly luciferase complementation imaging in cells and living animals.” PNAS 101.33 (2004): 12288-12293

Michnick, Stephen W. Ear, Po Hien. Manderson, Emily N. Remy, Ingrid. Stefan, Eduard. “Universal strategies in research and drug discovery based on protein-fragment complementation assays.” Nature Reviews 6 (2007): 569-582

Phee, Bong-Kwan. Kim, Jeong-Il. Shin, Dong Ho. Yoo, Jihye. Park, Kyoung-Jin. Han, Yun-Jeong. Kwon, Yong-Kook. Cho, Man-Ho. Jeon, Jong-Seong. Bhoo, Seong Hee. Hahn, Tae-Ryong. “A novel protein phosphatase indirectly regulates phytochrome-interacting factor 3 via phytochrome.” Biochem. J. 415 (2008): 247-255

Quail, Peter h. “Phytochrome Photosensory Signalling Networks.” Nature Reviews 3 (2002): 85-93

Smith, Harry. Xu, Yong. Quail, Peter H. “Antagonistic but Complementary Actions of Phytochromes A and B Allow Optimum Seedling De-Etiolation.” Plant Physiol 114 (1997): 637-641

Shimizu-Sato, Sae. Huq, Enamul. Tepperman, James M. Quail, Peter H. “A light-switchable gene promoter system.” Nature Publishing Group 20 (2002)

Short, Timothy W. “Overexpression of Arabidopsis Phytochrome B Inhibits Phytochrome A Function in the Presence of Sucrose.” Plant Physiology 119 (1999): 1497-1505

Smith, Harry. “Phytochromes and light signal perception by plants – an emerging synthesis.” Nature 407 (2000): 585-291

Stearman, Robert. Dancis, Andrew. Klausner, Richard D. “YIpDCE1 – an intergrating plasmid for dual constitutive expression in yeast.” Gene 212 (1998): 197-202

Subramanian, Chitra. Woo, Jongchan. Cai, Xue. Xu, Xiaodong. Servick, Stein. Johnson, Carl H. Nebenfuhr, Andreas. Von Arnim, Albrecht G. “A suite of tools and application notes for in vivo protein interaction assays using bioluminescence resonance energy transfer (BRET).” The Plant Journal 48 (2006): 138-152

Tan, Song. “A Modular Polycistronic Expression System for Overexpressing Protein Complexes in Escherichia coli.” Protein Expression and Purification 21 (2001): 224-234

Terry, Matthew J. Maines, Mahin D. Lagarias, J. Clark. “Inactivation of Phytochrome- and Phycobiliprotein-Chromophore Precursors by Rat Liver Biliverdin Reductase.” The Journal of Biological Chemistry. 35 (1993): 26099-26106

Tyszkiewicz, Amy B. Muir, Tom W. “Activation of protein splicing with light in yeast.” Nature Methods 5.4 (2008): 303-305

Weller, James L. Terry, Matthew J. Rameau, Catherine. Reid, James B. Kendrick, Richard E. “The Phytochrome-Deficient pcd1 Mutant of Pea is Unable to Convert Heme to Biliverdin IXa.” The Plant Cell 8 (1996): 55-67

Villalobos, Victor. Naik, Snehal. Piwnica-Worms, David. “Detection of Protein-Protein Interactions in Live Cells and Animals with Split Firefly Luciferase Protein Fragment Complementation.” Methods in Molecular Biology 439.
































































































































































































Team

Projects

Parts

References

Lab Notebook

Ethics

Safety

Acknowledgements

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