"
Team:HKU-HKBU/Polar Expression Results
From 2009.igem.org
| Line 22: | Line 22: | ||
[[Image:HKU-HKBU_polar_expression_results_E_coli_fluorescent.png | center|thumb]] | [[Image:HKU-HKBU_polar_expression_results_E_coli_fluorescent.png | center|thumb]] | ||
| - | For this project of bactomotor, we required the one side expression of specific proteins and the swimming ability of the bacteria at the same time. However, the BL21 strain couldn't swim. Therefore we need to apply this system into our new candidate ''YBE01''. While ''YBE01'' didn't contain T7 polymerase, being not able to activate T7 promoter in this plasmid. Therefore, a new plasmid should be constructed | + | For this project of bactomotor, we required the one side expression of specific proteins and the swimming ability of the bacteria at the same time. However, the BL21 strain couldn't swim. Therefore we need to apply this system into our new candidate ''YBE01''. While ''YBE01'' didn't contain T7 polymerase, being not able to activate T7 promoter in this plasmid. Therefore, a new plasmid should be constructed. |
===SDS PAGE and Western Blotting=== | ===SDS PAGE and Western Blotting=== | ||
| - | + | The surface expression of streptavidin was essential to specificly binding with biotin-coated motor. To prove the GFP-streptavidin was expressed on the outer membrane of the bacteria through AIDA system, SDS PAGE and Western Blotting , the relatively higher GFP protein concentration was observed on the outer membrane, which corresponded with the expected result of the specific expression of proteins on the outer membrane. | |
[[Image:HKU-HKBU_polar_expression_results_E_coli_western.png | center|thumb]] | [[Image:HKU-HKBU_polar_expression_results_E_coli_western.png | center|thumb]] | ||
Revision as of 14:15, 16 October 2009
Contents |
Strain Selecion
Swimming ability assay
The purpose of this part is to find one or servel strains of bacteria which could swim. Therefore, we tested bacteria of E.coli and Salmonella. The swimming plates of BL21, NCM3722 and MG3 yielded negative results. We found Salmonella - we named it YBS01 is a bacteria with high swimming abilities (~4.5mm/hr), and a kind of E.coli 2443, we named it YBE01 showed even more impressive performance, with a speed of approximate 5.5mm increase in radius every hour at the end of eight-hour-experiment.
LPS completeness search
LPS takes vital part in AIDA polar expression system. Due to many mutations exist in different strains of E.coli or Salmonella, some of these mutations may cause the defcient in there LPS layers. There mutants could survival in the culture. But for AIDA expression, when the host's LPS is incomplete, the AIDA will express all over the bacteria surface; when the host's LPS is complete, the AIDA will express only on one side of the bacteria. After literature reviews, E. coli 2443-YBE01 [1] and Salmonella-YBS01 [2] are identified to possess complete LPS layer. Their ability to express desirable proteins on the head is examined in later experiment.
Polar Expression
AIDA polar expression system
Fluorescent Microscope
After literature review, we found the E.coli BL21 was also LPS complete strains. Therefore, we used the plasmid containing T7 promoter which controlled the expression of GFP-Strp-AIDA. BL21 strain contained T7 polymerase natually, therefore when the IPTG was added into the culture medium, GFP-Strp-AIDA would be strongly induced. In the figure below, it showed the expression of GFP. This expression under the fluorescent microscope using oil lens with the manification of 600 times. In the merge picture of dark field and FITC field, the fluorescent proteins were showed at one end of the bacteria.
For this project of bactomotor, we required the one side expression of specific proteins and the swimming ability of the bacteria at the same time. However, the BL21 strain couldn't swim. Therefore we need to apply this system into our new candidate YBE01. While YBE01 didn't contain T7 polymerase, being not able to activate T7 promoter in this plasmid. Therefore, a new plasmid should be constructed.
SDS PAGE and Western Blotting
The surface expression of streptavidin was essential to specificly binding with biotin-coated motor. To prove the GFP-streptavidin was expressed on the outer membrane of the bacteria through AIDA system, SDS PAGE and Western Blotting , the relatively higher GFP protein concentration was observed on the outer membrane, which corresponded with the expected result of the specific expression of proteins on the outer membrane.
When observing the moving strains in the microscope, we could find that all the GFP were expressed at the forehead end of the rod shaped bacteria. Therefore, this system was a perfect choice for binding with biotin-coated motor. It can express streptavidin at pole(s), which allows cells to adhere in the same orientation to a microrotatory motor through biotin-streptavidin interaction.
Salmonella polar expression system
Fluorescent Microscope
plasmids showed the expression of GFP in the bacteria and the polar expression pattern of the GFP protein. The left panel is a scan of salmonella 7207 with Lpp-OmpA-HA, which acts as a control. The right panel can show the successful expression of GFP in the bacteria.
Western Blotting
To verify this hypothesis in a more convincing way, Western Blotting was conducted, which could reflect the surface expression by studying the relative concentrations of expressed proteins. The relative higher concentrations of specific proteins on the outer membrane show that the GFP proteins are particularly expressed on the outer membrane.
Unfortunately, the expression of GFP at the two ends is of equal opportunity, which couldn’t be an effective propelling system to push motor’s directional rotation. It’s better for proteins to specifically express proteins at the head of the bacteria, which ensures the pushing force to the motion of the motor.
Reference
- Sumita Jain, Peter van Ulsen, Inga Benz, M. Alexander Schmidt, Rachel Fernandez, Jan Tommassen, and Marcia B. Goldberg, Polar Localization of the Autotransporter Family of Large Bacterial Virulence Proteins, Journal of Bacteriology, July 2006, p. 4841-4850, Vol. 188, No. 13
- Maurien M. A. Olsthoorn, Bent O. Petersen, Siegfried Schlecht, Johan Haverkamp, Klaus Bock, Jane E. Thomas-Oates and Otto Holst, Identification of a Novel Core Type in Salmonella Lipopolysaccharide, The Journal of Biological Chemistry, Vol. 273, No. 7, Issue of February 13, pp. 3817-3829, 1998
