Team:Stanford/sBOLvPage

From 2009.igem.org

(Difference between revisions)
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Basic Parts
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Central Dogma Symbols
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<Table>
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<th> hi </th>
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</table>
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{| class="wikitable"
{| class="wikitable"
|-
|-
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! Concept
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! Part
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! Subclass
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! Forward
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! Status
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-
! Forward  
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! Reverse
! Reverse
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! Bidirectional
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! Other
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! Proposed By
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! Information
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! Discussion
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|-
|-
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| '''Promoter'''
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| "'Origin of Replication"'
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| '''General'''
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| [[Image:Origin1.png]]
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| Consensus
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| [[Image:Origin2.png]]
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| [[Image:VBOL.Promoter+.png]]
+
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| [[Image:VBOL.Promoter-.png]]
+
-
|
+
|
|
|
|
|-
|-
 +
| "'Constitutive Promoter'''
 +
| [[Image:VBOL.Promoter+.png]]
 +
| [[Image:VBOL.Promoter-.png]]
|
|
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| '''Constitutive'''
 
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| Proposed
 
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| [[Image:VBOL.Constitutive_Promoter+11.png]]
 
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| [[Image:VBOL.Constitutive_Promoter-11.png]]
 
-
|
 
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| [[User:Suzanne_Bartram | S. Bartram]], [[User:Endy | A. Endy]]
 
|
|
|-
|-
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|
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| '''Inducible Promoter'''
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| '''Constitutive'''
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| Proposed
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| [[Image:VBOL.Constitutive_Promoter+1.png]]
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| [[Image:VBOL.Constitutive_Promoter-1.png]]
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-
|
+
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| [[User:Suzanne_Bartram | S. Bartram]], [[User:Endy | A. Endy]]
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-
|
+
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|-
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|
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| '''Inducible'''
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| Proposed
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| [[Image:VBOL.Inducible_Promoter+1.png]]
| [[Image:VBOL.Inducible_Promoter+1.png]]
| [[Image:VBOL.Inducible_Promoter-1.png]]
| [[Image:VBOL.Inducible_Promoter-1.png]]
|
|
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| [[User:Suzanne_Bartram | Suzie Bartram]]
 
|
|
|-
|-
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|
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| '''Repressible Promoter'''
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| '''Inducible'''
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| Under Development
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| [[Image:VBOL.Inducible_Promoter+11.png]]
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| [[Image:VBOL.Inducible_Promoter-11.png]]
+
-
|
+
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| [[User:Suzanne_Bartram | S. Bartram]], [[User:Endy | A. Endy]]
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-
|
+
-
|-
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-
|
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| '''Inducible'''
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-
| Under Development
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| [[Image:VBOL.Inducible_Promoter+111.png]]
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| [[Image:VBOL.Inducible_Promoter-111.png]]
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-
|
+
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| [[User:Suzanne_Bartram | S. Bartram]], [[User:Endy | A. Endy]]
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-
|
+
-
|-
+
-
|
+
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| '''Repressible'''
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-
| Proposed
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| [[Image:VBOL.Repressible_Promoter+1.png]]
| [[Image:VBOL.Repressible_Promoter+1.png]]
| [[Image:VBOL.Repressible_Promoter-1.png]]
| [[Image:VBOL.Repressible_Promoter-1.png]]
|
|
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| [[User:Suzanne_Bartram | Suzie Bartram]]
 
|
|
|-
|-
-
|
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| '''Promoters With Operators'''
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| '''Repressible'''
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| [[Image:VBOL.PromoterOperator+.png]]
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| Under Development
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| [[Image:VBOL.PromoterOperator-.png]]
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| [[Image:VBOL.Inducible_Promoter+100.png]]
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| [[Image:VBOL.PromoterOperator2.png]]
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| [[Image:VBOL.Inducible_Promoter-100.png]]
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-
|
+
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| [[User:Suzanne_Bartram | S. Bartram]], [[User:Endy | A. Endy]]
+
|
|
|-
|-
 +
| '''Open Reading Frame'''
 +
| [[Image:VBOL.ORF+.png]]
 +
| [[Image:VBOL.ORF-.png]]
|
|
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| '''Repressible'''
 
-
| Under Development
 
-
| [[Image:VBOL.Inducible_Promoter+110.png]]
 
-
| [[Image:VBOL.Inducible_Promoter-110.png]]
 
-
|
 
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| [[User:Suzanne_Bartram | S. Bartram]], [[User:Endy | A. Endy]]
 
|
|
|-
|-
-
|
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| '''Translational Start Site'''
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| '''?'''
+
-
| Under Development
+
-
| [[Image:VBOL.Inducible_Promoter+112.png]]
+
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| [[Image:VBOL.Inducible_Promoter-112.png]]
+
-
|
+
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| [[User:Suzanne_Bartram | S. Bartram]], [[User:Endy | A. Endy]]
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-
|
+
-
|-
+
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| '''Ribosome Binding Site'''
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-
| '''General'''
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-
| Proposed
+
-
|
+
-
|
+
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| [[Image:VBOL.RBSG.png]]
+
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| [http://partsregistry.org PartsRegistry.org]
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-
|
+
-
|-
+
-
|
+
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| '''Directional'''
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-
| Proposed
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| [[Image:VBOL.RBS+1.png]]
| [[Image:VBOL.RBS+1.png]]
| [[Image:VBOL.RBS-1.png]]
| [[Image:VBOL.RBS-1.png]]
|
|
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| Timothy Ham
 
|
|
|-
|-
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|
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| "'Terminator"'
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|'''Directional'''
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| Proposed
+
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| [[Image:VBOL.RBS.F.2.png]]
+
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| [[Image:VBOL.RBS.R.2.png]]
+
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|
+
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| [[User:Alec_Nielsen | Alec Nielsen]]
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-
|
+
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|-
+
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| '''Open Reading Frame'''
+
-
|
+
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| Consensus
+
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| [[Image:VBOL.ORF+.png]]
+
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| [[Image:VBOL.ORF-.png]]
+
-
|
+
-
|
+
-
|
+
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|-
+
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| '''Transcription Terminator'''
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-
|
+
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| Consensus
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| [[Image:VBOL.Terminator+.png]]
| [[Image:VBOL.Terminator+.png]]
| [[Image:VBOL.Terminator-.png]]
| [[Image:VBOL.Terminator-.png]]
| [[Image:VBOL.Terminator.png]]
| [[Image:VBOL.Terminator.png]]
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| [[User:Jerome_Bonnet | Jerome Bonnet]]
 
|
|
|-
|-
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| '''Restriction Site'''
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| '''Primer Site'''
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| '''General'''
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| [[Image:VBOL.Primer+.png]]
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| Proposed
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| [[Image:VBOL.Primer-.png]]
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|  
+
|
|
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| [[Image:VBOL.Restriction.png]]
 
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| [[User:Jerome_Bonnet | Jerome Bonnet]]
 
|
|
|-
|-
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| "'Ribonuclease Site"'
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| [[Image:Ribonuclease.png]]
|
|
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| '''General'''
 
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| Proposed
 
|
|
-
|
 
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| [[Image:VBOL.Restriction1.png]]
 
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| [[User:Raik | Raik Gruenberg]]
 
|
|
|-
|-
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|
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| "'RNA Stability Elements"'
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| '''Overhang'''
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| [[Image:RNAStability1.png]]
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| Proposed
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| [[Image:RNAStability2.png]]
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|
+
| [[Image:RNAStability3.png]]
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|
+
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| [[Image:VBOL.Cutter1.png]]
+
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| [[User:Raik | Raik Gruenberg]]
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|
|
|-
|-
 +
| "'Protease Site"'
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| [[Image:Protease.png]]
|
|
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| '''Overhang'''
 
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| Proposed
 
|
|
-
|
 
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| [[Image:VBOL.Cutter2.png]]
 
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| [[User:Raik | Raik Gruenberg]]
 
|
|
|-
|-
 +
| "Protein Degradation Elements"'
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| [[Image:Proteindegrade1.png]]
 +
| [[Image:Proteindegrade2.png]]
 +
| [[Image:Proteindegrade3.png]]
|
|
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| '''Blunt'''
 
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| Proposed
 
-
|
 
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|
 
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| [[Image:VBOL.CutterBlunt2.png]]
 
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| [[User:Raik | Raik Gruenberg]]
 
|
|
 +
|}
 +
 +
 +
Genetic Engineering Symbols
 +
{| class="wikitable"
 +
|-
 +
! Part
 +
! Forward
 +
! Reverse
 +
! Other
 +
! Information
|-
|-
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| '''Primer Site'''
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| '''Barcode'''
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|
+
| [[Image:Barcode+.png]]
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| Consensus
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| [[Image:Barcode-.png]]
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| [[Image:VBOL.Primer+.png]]
+
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| [[Image:VBOL.Primer-.png]]
+
-
|
+
|
|
|
|
|-
|-
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| '''Assembly'''
 
| '''Prefix'''
| '''Prefix'''
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| Under Development
 
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|
 
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|
 
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| [[Image:VBOL.prefix.png]]
 
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| [[User:Suzanne_Bartram | S. Bartram]], [[User:Endy | A. Endy]]
 
-
|
 
-
|-
 
-
|
 
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| '''Prefix'''
 
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| Under Development
 
-
|
 
-
|
 
| [[Image:VBOL.prefix1.png]]
| [[Image:VBOL.prefix1.png]]
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| [[User:Suzanne_Bartram | S. Bartram]], [[User:Endy | A. Endy]]
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| [[Image:VBOL.prefix2.png]]
|
|
-
|-
 
-
|
 
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| '''Suffix'''
 
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| Under Development
 
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|
 
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|
 
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| [[Image:VBOL.suffix.png]]
 
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| [[User:Suzanne_Bartram | S. Bartram]], [[User:Endy | A. Endy]]
 
|
|
|-
|-
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|
 
| '''Suffix'''
| '''Suffix'''
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| Under Development
 
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|
 
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|
 
| [[Image:VBOL.suffix1.png]]
| [[Image:VBOL.suffix1.png]]
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| [[User:Suzanne_Bartram | S. Bartram]], [[User:Endy | A. Endy]]
+
| [[Image:VBOL.suffix1.png]]
|
|
-
|-
 
-
|
 
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| '''Scar'''
 
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| Under Development
 
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|
 
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|
 
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| [[Image:scarx.png]]
 
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| [[User:Suzanne_Bartram | S. Bartram]], [[User:Endy | A. Endy]]
 
|
|
|-
|-
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|
 
| '''Scar'''
| '''Scar'''
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| Proposed
+
| [[Image:scar1.png]]
-
|
+
| [[Image:scarout.png]]
-
|
+
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| [[Image:VBOL.Scar1.png]]
+
-
| [[User:Alec_Nielsen | Alec Nielsen]]
+
-
|
+
-
|-
+
-
|
+
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| '''Scar'''
+
-
| Proposed
+
-
|
+
-
|
+
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| [[Image:VBOL.Scar2.png]]
+
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| [[User:Suzanne_Bartram | Suzie Bartram]]
+
-
|
+
-
|-
+
-
|
+
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| '''Scar'''
+
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| Proposed
+
-
|
+
-
|
+
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| [[Image:VBOL.Scar3.png]]
+
-
| Multiple
+
-
|
+
-
|-
+
-
|
+
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| '''Scar'''
+
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| Proposed
+
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| [[Image:VBOL.Scar4.F.png]]
+
-
| [[Image:VBOL.Scar4.R.png]]
+
|  
|  
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| [[User:Alec_Nielsen | Alec Nielsen]]
 
|
|
|-
|-
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|
+
|"'Restriction Sites"
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| '''Blunt'''
+
| [[Image:3Restriction.png]]
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| Proposed
+
| [[Image:5Restriction.png]]
-
|
+
| [[Image:Bluntrestriction.png]]
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|
+
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| [[Image:VBOL.CutterBlunt1.png]]
+
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| [[User:Raik | Raik Gruenberg]]
+
|
|
|-
|-
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| '''Protein Degradation Tag'''
+
| "'Type IIs Off-Set Cutters"'
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|
+
| [[Image:offsetcutterup.png]]
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| Coming Soon...
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| [[Image:offsetcutterdown.png]]
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|
+
-
|
+
-
|
+
|
|
|
|
|}
|}

Revision as of 22:00, 18 October 2009

Home Project Modeling Parts Notebook Team SBOL-V


Central Dogma Symbols

Part Forward Reverse Other Information
"'Origin of Replication"' Origin1.png Origin2.png
"'Constitutive Promoter VBOL.Promoter+.png VBOL.Promoter-.png
Inducible Promoter VBOL.Inducible Promoter+1.png VBOL.Inducible Promoter-1.png
Repressible Promoter VBOL.Repressible Promoter+1.png VBOL.Repressible Promoter-1.png
Promoters With Operators VBOL.PromoterOperator+.png VBOL.PromoterOperator-.png VBOL.PromoterOperator2.png
Open Reading Frame VBOL.ORF+.png VBOL.ORF-.png
Translational Start Site VBOL.RBS+1.png VBOL.RBS-1.png
"'Terminator"' VBOL.Terminator+.png VBOL.Terminator-.png VBOL.Terminator.png
Primer Site VBOL.Primer+.png VBOL.Primer-.png
"'Ribonuclease Site"' Ribonuclease.png
"'RNA Stability Elements"' RNAStability1.png RNAStability2.png RNAStability3.png
"'Protease Site"' Protease.png
"Protein Degradation Elements"' Proteindegrade1.png Proteindegrade2.png Proteindegrade3.png


Genetic Engineering Symbols

Part Forward Reverse Other Information
Barcode Barcode+.png Barcode-.png
Prefix VBOL.prefix1.png VBOL.prefix2.png
Suffix VBOL.suffix1.png VBOL.suffix1.png
Scar Scar1.png Scarout.png
"'Restriction Sites" 3Restriction.png 5Restriction.png Bluntrestriction.png
"'Type IIs Off-Set Cutters"' Offsetcutterup.png Offsetcutterdown.png
Retrieved from "http://2009.igem.org/Team:Stanford/sBOLvPage"