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Team:USTC Software/hoWRestriction
From 2009.igem.org
(Difference between revisions)
(New page: ==List== {| border = "1" align = "center" |- |No |Item |- |1. |Node |- |2. |Target Time Course |- |3. |Input Data |- |4. |Initial Values |- |5. |Initial Parameters |- |6. |Network ...) |
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|Algorithm Parameters | |Algorithm Parameters | ||
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| + | *1. Node: Lets you specify the numbers of species you need to construct a network | ||
| + | |||
| + | *2. Target Time Course Output: (1) simulation result (2) SBML (3) Robustness (4) reaction chart (5) biobrick information (sequence, ID, structure) | ||
| + | |||
| + | *3. Input Data: Lets you input desired dynamics of one or more species as time course | ||
| + | |||
| + | *4. Initial Values: Lets you specify the initial value of species | ||
| + | |||
| + | *5. Initial Parameters: Lets you specify the initial value of a parameter | ||
| + | |||
| + | *6. Network Restriction: Lets you cut unnecessary edges between species and restrict special rate term form of ceritain species | ||
| + | |||
| + | *7. Parameter Restriction: Lets you specify a parameter value that holds at all times during simulation, and is a function of other model component values in the model | ||
| + | |||
| + | *8. Parameter Relation Restriction: Lets you specify mathematical constraints on one or more parameters, species, or compartments that must hold during a simulation | ||
| + | |||
| + | *9. Parameter Range: Lets you specify the feasible range of parameters regardless of "6. PARAM_RESTRI" | ||
| + | |||
| + | *10. Candidate Function List: All possible types of functions following different kinetic laws (see Table.1) | ||
| + | |||
| + | *11. User Define Function: Lets users define any form of reaction term not constrained to one or two varaibles | ||
| + | |||
| + | *12. Algorithm Parameters: Lets you specify parameter values in genetic algorithm | ||
Revision as of 14:57, 19 October 2009
List
| No | Item |
| 1. | Node |
| 2. | Target Time Course |
| 3. | Input Data |
| 4. | Initial Values |
| 5. | Initial Parameters |
| 6. | Network Restriction |
| 7. | Parameter Restriction |
| 8. | Parameter Relation Restriction |
| 9. | Parameter Range |
| 10. | Candidate Function List |
| 11. | User Define Function |
| 12. | Algorithm Parameters |
- 1. Node: Lets you specify the numbers of species you need to construct a network
- 2. Target Time Course Output: (1) simulation result (2) SBML (3) Robustness (4) reaction chart (5) biobrick information (sequence, ID, structure)
- 3. Input Data: Lets you input desired dynamics of one or more species as time course
- 4. Initial Values: Lets you specify the initial value of species
- 5. Initial Parameters: Lets you specify the initial value of a parameter
- 6. Network Restriction: Lets you cut unnecessary edges between species and restrict special rate term form of ceritain species
- 7. Parameter Restriction: Lets you specify a parameter value that holds at all times during simulation, and is a function of other model component values in the model
- 8. Parameter Relation Restriction: Lets you specify mathematical constraints on one or more parameters, species, or compartments that must hold during a simulation
- 9. Parameter Range: Lets you specify the feasible range of parameters regardless of "6. PARAM_RESTRI"
- 10. Candidate Function List: All possible types of functions following different kinetic laws (see Table.1)
- 11. User Define Function: Lets users define any form of reaction term not constrained to one or two varaibles
- 12. Algorithm Parameters: Lets you specify parameter values in genetic algorithm
