Revision as of 20:06, 21 October 2009

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Wet Lab!!

General objectives

Uriel Laura Nando Abraham Paz

I. Biobrick Assembly of the Kamikaze system

Many cuts, pastes and clones for biobrick organization into the suicide system!!
In the hands of:
Abraham and Paz

II. Construction of the standardized P4 vector

An incredible and challenging fight against PCR and logical thinking!!In charge:
Nando and Paz

III. Construction of the P4-producing strain

A passionate struggle with natural selection and recombination!!
leading:
Uriel, Laura, and Miguel

IV. System testing and parameter obtention

The integrative side of the bite back
In the hands of: Laura (and Everyone else soon!)

Are you ready 2 rumble??

Personal Objectives

Uriel Urquiza

- Construction of the phage production control system.

  In order to produce a grate amount of P4 phage particles that has our death system, we want to avoid the natural
  early lysis that occur when WT P4 and P2 interact. This avoidance will be achieved by taking the control of the two
  major regulators of P2 morphopoietic genes. The control systems that is going to be implemented is constituted by a 
  promoter inducible by IPTG () in conjunction with transactivators cox and ogr from phage P2. All this will allow 
  us to grow bacteria in grate quantities and induce lysis when ever we want and as a consequence obtation of grate
  amounts of P4 phage.

Laura Gomez

- To obtain all the relevant experimental information about T7 and T3.

 Model validation needs some critical parameters like strain(C1a) growth rate and the T3 and T7 burst sizes. The 
 parameters found in the literature correspond to k12 strain however we used a k12 derivative strain, C1a, for this 
 reason it was indispensable to obtain experimentally a C1a growth plot. In the same way, simulations
 showed us that the burst size is a critical parameter to determine the efficiency of our system.

- Generation of data to feedback the infection model.

 The experimental data would be used to feedback the model in order to obtain the most accurate model as possible.

Abraham Avelar

Fernando Montaño

Enrique Paz

Work Journals

Nando's Lab Journal

Uriel's Lab Journal

Abraham's Lab Journal

Laura's Lab Journal

[http://openwetware.org/wiki/User:Paz_C._Enrique/Notebook/Paz_C._Enrique_-_Projects#Personal_objectives Enrique's Lab Journal]

@@ Line 56: / Line 56: @@
 ** To obtain all the relevant experimental information about T7 and T3.
-   To validate the model we need to validate some critical parameters like the growth rate of the strain used(c1a)and
+   Model validation needs some critical parameters like strain(C1a) growth rate and the T3 and T7 burst sizes. The
-  the T3 and T7 burst sizes. The parameters found in the literature correspond to k12 strain however we used a k12
+  parameters found in the literature correspond to k12 strain however we used a k12 derivative strain, C1a, for this
-  derivative strain, C1a, for this reason it was indispensable to obtain a C1a growth plot. In the same way, the simulations
+  reason it was indispensable to obtain experimentally a C1a growth plot. In the same way, simulations
    showed us that the burst size is a critical parameter to determine the efficiency of our system.

Team:LCG-UNAM-Mexico/Wet Lab/Objectives

From 2009.igem.org