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Team:Groningen/Brainstorm/Modelling
From 2009.igem.org
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(More from 2008) |
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*RNA folding (secondary structure) | *RNA folding (secondary structure) | ||
**[https://2008.igem.org/Team:Alberta_NINT/Modeling Alberta 2008], using [http://rna.urmc.rochester.edu/rnastructure.html RNAstructure] and UNAFold (with a front-end), they used both programs (presumably to get an idea of the certainty) | **[https://2008.igem.org/Team:Alberta_NINT/Modeling Alberta 2008], using [http://rna.urmc.rochester.edu/rnastructure.html RNAstructure] and UNAFold (with a front-end), they used both programs (presumably to get an idea of the certainty) | ||
| - | *Molecular Circuit (?) | + | *Molecular/genetic Circuit (?) |
**[https://2008.igem.org/Team:Bologna/Modeling Bologna 2008], using Simulink (Mathworks) | **[https://2008.igem.org/Team:Bologna/Modeling Bologna 2008], using Simulink (Mathworks) | ||
**[https://2008.igem.org/Team:ETH_Zurich/Modeling/Switch_Circuit ETH Zurich 2008], using the Symbiology toolbox in Matlab | **[https://2008.igem.org/Team:ETH_Zurich/Modeling/Switch_Circuit ETH Zurich 2008], using the Symbiology toolbox in Matlab | ||
| + | **[https://2008.igem.org/Team:iHKU/modeling IHKU 2008] | ||
*Cell processes | *Cell processes | ||
**[https://2008.igem.org/Modeling Calgary 2008], using their own tool (transcription and translation) | **[https://2008.igem.org/Modeling Calgary 2008], using their own tool (transcription and translation) | ||
*Static genome analysis (?) | *Static genome analysis (?) | ||
**[https://2008.igem.org/Team:ETH_Zurich/Modeling/Genome_Static_Analysis ETH Zurich 2008], using their own tool | **[https://2008.igem.org/Team:ETH_Zurich/Modeling/Genome_Static_Analysis ETH Zurich 2008], using their own tool | ||
| - | *Genome Scale Model (cell | + | *Genome Scale Model (whole cell response) |
| - | **[https://2008.igem.org/Team:ETH_Zurich/Modeling/Genome-Scale_Model ETH Zurich 2008] | + | **[https://2008.igem.org/Team:ETH_Zurich/Modeling/Genome-Scale_Model ETH Zurich 2008], using the [http://gcrg.ucsd.edu/Downloads/Cobra_Toolbox Cobra Toolbox] for Matlab |
| + | *Chemostat simulation | ||
| + | **[https://2008.igem.org/Team:ETH_Zurich/Modeling/Chemostat_Selection ETH Zurich 2008], using their genome scale model data | ||
| + | *Cell movement | ||
| + | **[https://2008.igem.org/Team:iHKU/modeling IHKU 2008], as random walks | ||
==Literature== | ==Literature== | ||
See our [[Team:Groningen/Literature/Modelling|literature list]]. For our team members that are looking for books on the subject, have a look under code 605B (Bernoulliborg library, lower floor). | See our [[Team:Groningen/Literature/Modelling|literature list]]. For our team members that are looking for books on the subject, have a look under code 605B (Bernoulliborg library, lower floor). | ||
Revision as of 09:44, 22 April 2009
Systems from previous years
- RNA folding (secondary structure)
- Alberta 2008, using [http://rna.urmc.rochester.edu/rnastructure.html RNAstructure] and UNAFold (with a front-end), they used both programs (presumably to get an idea of the certainty)
- Molecular/genetic Circuit (?)
- Bologna 2008, using Simulink (Mathworks)
- ETH Zurich 2008, using the Symbiology toolbox in Matlab
- IHKU 2008
- Cell processes
- Calgary 2008, using their own tool (transcription and translation)
- Static genome analysis (?)
- ETH Zurich 2008, using their own tool
- Genome Scale Model (whole cell response)
- ETH Zurich 2008, using the [http://gcrg.ucsd.edu/Downloads/Cobra_Toolbox Cobra Toolbox] for Matlab
- Chemostat simulation
- ETH Zurich 2008, using their genome scale model data
- Cell movement
- IHKU 2008, as random walks
Literature
See our literature list. For our team members that are looking for books on the subject, have a look under code 605B (Bernoulliborg library, lower floor).
