References (By Author)

Adam (1977) Shear degradation of DNA

Ang (1989) The Heat-Shock-Regulated grpE Gene of Escherichia coli Is Required for Bacterial Growth at All Temperatures but Is Dispensable in Certain Mutant Backgrounds

Apirion (1993) RNA processing in prokaryotic cells

Arkin (2008) Setting the standard in synthetic biology

Baba (2006) Construction of Escherichia coli K-12 in-frame, single gene knockout mutants: the Keio collection

Bernstein (2002) Global analysis of mRNA decay and abundance in Escherichia coli at single-gene resolution using two-color fluorescent DNA microarrays

Bitinaite (2007) USERTM friendly DNA engineering and cloning method by uracil excision

Bouch (1973) Synthesis of Unmethylated Deoxyribonucleic Acid in a dnaB Temperature-Sensitive Mutant of Escherichia coli Starved for Methionine

Canton (2008) Refinement and standardization of synthetic biological parts and devices

Chakrabarti (2009) Shear unzipping of DNA

Chan (2005) Refactoring bacteriophage T7

Clark (1989) The fermentation pathways of Escherichia coli

Cox (2007) Programming gene expression with combinatorial promoters

Datsenko (2000) One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products

Dekhtyar (2008) Triad pattern algorithms for predicting strong promoter candidates in bacterial genomes

Dancis (1978) Shear breakage of DNA

Davison (1959) The effect of hydrodynamic shear of DNA from T2 and T4 bacteriophages

Dennis (2004) Control of rRNA Synthesis in Escherichia coli: a Systems Biology Approach

DeVito (2007) Recombineering with tolC as a selectable/counter-selectable marker: remodeling the rRNA operons in Escherichia coli

Ellwood (1982) Chromosomal Locations of the Genes for rRNA in Escherichia coli K-12t

Eschenfeldt (2009) A family of LIC vectors for high through-put cloning and purification of proteins

Evans (1997) Dynamic strength of molecular adhesion bonds

Feher (2008) Scarless engineering of the Escherichia coli genome

Filpula (1978) Regulation of the Synthesis of Ribonucleoside Diphosphate Reductase in Escherichia coli: Specific Activity of the Enzyme in Relationship to Perturbations of DNA Replication

Flower (1986) The adjacent dnaZ and dnaX genes of Escherichia coli are contained within one continuous open reading frame

Fogg (2002) Structural basis for uracil recognition by archaeal family B DNA polymerases

Fukiya (2004) An improved method for deleting large regions of Escherichia coli K-12 chromosome using a combination of Cre/loxP and lambda red

Gerdes (2003) Experimental determination and systems level analysis of essential genes in Escherichia coli MG1665

Gibson (2008) One step assembly in yeast of 25 overlapping DNA fragments to form a complete synthetic Mycoplasma genitalium genome

Gibson (2008) Complete chemical synthesis, assembly, and cloning of a Mycoplasma genitalium

Gibson (2009) Enzymatic assembly of DNA molecules up to several hundred kilobases

Gil (2004) Determination of the core of a minimal bacterial gene set

Groth (2004) Phage integrases: biology and applications

Haber (2000) Shear induced assembly of lambda phage DNA

Haldimann (2001) Conditional-Replication, Integration, Excision, and Retrieval Plasmid-Host Systems for Gene Structure-Function Studies of Bacteria

Hashimoto (2005) Cell size and nucleoid organization of engineered Escherichia coli cells with a reduced genome

Hasunuma (1979) Effect of dna Mutations on the Replication of Plasmid pSC101 in Escherichia coli K-12

Hayashi (2006) Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110

Hawley (1983) Compilation and analysis of Escherichia coli promoter DNA sequences

Heckman (2007) Gene splicing and mutagenesis by PCR driven overlap extension

Herring (2007) Gene replacement without selection: regulated suppression of amber mutations in Escherichia coli

Holt (2007) Rebuilding microbial genomes

Huang (1996) Binding of biotinylated DNA to streptavidin-coated polystyrene latex: effects of chain length and particle size

Jendrejack (2002) Stochastic simulations of DNA in flow: dynamics and the effects of hydrodynamic interactions

Jin (2006) Influences on gene expression in vivo by a Shine-Dalgarno sequence

Kaczanowska (2007) Ribosome biogenesis and the translation process in Escherichia coli

Katayama (1989) Genetic Suppression of a dnaG Mutation in Escherichia coli

Kato (2007) Construction of consecutive deletions of the Escherichia coli chromosome

Kato (2008) Construction of long chromosomal deletion mutants of Escherichia coli and minimization of the genome

Kelly (2009) Measuring the activity of BioBrick promoters using an in vivo reference standard

Kelman (1995) DNA polymerase III holoenzyme: structure and function of a chromosomal replicating machine

Kitagawa (2005) Complete set of ORF clones of Escherichia coli ASKA library (a complete set of Escherichia coli K-12 ORF archive): unique resources for biological research

Knight 2003 Idempotent Vector Design for Standard Assembly of Biobricks

Kolisnychenko (2002) Engineering a reduced Escherichia coli genome

Kornberg (1988) DNA Replication

Kowalczykowski (1994) Biochemistry of homologous recombination in Escherichia coli

Kudla (2009) Coding-sequence determinants of gene expression in Escherichia coli

Lau (2003) Spatial and temporal organization of replicating Escherichia coli chromosomes

Lee (2006) BioWarehouse: a bioinformatics database warehouse toolkit

Lengsfeld (2002) Shear-induced degradation of plasmid DNA

Levy (1999) Effect of shear on plasmid DNA in solution

Lu (2004) Vector NTI, a balanced all-in-one sequence analysis suite

Lu (2006) Absolute protein expression profiling estimates the relative contributions of transcriptional and translational regulation

Manen (1991) Replication of plasmid pSC101

Masai (1988) Operon Structure of dnaT and dnaC Genes Essential for Normal and Stable DNA Replication of Escherichia coli Chromosome

Meyer (2000) Identification of the mob Genes of Plasmid pSC101 and Characterization of a Hybrid pSC101-R1162 System for Conjugal Mobilization

Mizushima (1998) Site-directed Mutational Analysis for the ATP Binding of DnaA Protein

Morgan (1977) Identification of spacer tRNA genes in individual ribosomal RNA transcription units of Escherichia coli

Muyrers (2001) Techniques: recombinogenic engineering - new options for cloning and manipulating DNA

Nomura (1999) Engineering of bacterial ribosomes: Replacement of all seven Escherichia coli rRNA operons by a single plasmid-encoded operon

Posfai (1999) Markerless gene replacement in Escherichia coli stimulated by double strand break in the chromosome

Posfai (2006) Emergent properties of reduced genome Escherichia coli

Rao (1994) Conjugal Mobilization of Plasmid DNA: Termination Frequency at the Origin of Transfer of Plasmid R1162

Reyes-Lamothe (unknown) Escherichia coli and its chromosome

Richmond (1999) Genome-wide expression profiling in Escherichia coli K-12

Rocha (2004) The replication-related organization of bacterial genomes

Rubin (1999) In vivo transposition of mariner based elements in enteric bacteria and mycobacteria

Sezonov (2007) Escherichia coli physiology in Luria-Bertani broth

Sheng (1995) Transformation of Escherichia coli with large DNA molecules by electroporation

Shetty (2008) Engineering BioBrick vectors from BioBrick parts

Shizuya (1992) Cloning and stable maintenance of 300-kilobase-pair fragments of human DNA in Escherichia coli using an F-factor-based vector

Siegele (1997) Gene expression from plasmids containing the araBAD promoter at subsaturating inducer concentrations represents mixed populations

Vocke (1983) Primary structure of the essential replicon of the plasmid pSC101

Warming (2005) Simple and highly efficient BAC recombineering using galK selection

Warren (2008) Transcription of foreign DNA in Escherichia coli

Woodside (2008) Folding and unfolding single RNA molecules under tension

Yamamoto (1974) Replication of Escherichia coli requires DNA polymerase 1

Yu (2008) Rapid and efficient construction of markerless deletions in the Escherichia coli genome

Zhang (2000) DNA cloning by homologous recombination in Escherichia coli