Team:UC Davis/Adding secretion/model 1
From 2009.igem.org
Line 148: | Line 148: | ||
are intending to harness and make use of this feature by fusing a | are intending to harness and make use of this feature by fusing a | ||
specific | specific | ||
- | protein to it. <o:p></o:p></span>< | + | protein to it. <o:p></o:p></span><br> |
- | + | <i><span | |
style="font-size: 12pt; font-family: "Times New Roman","serif";">We | style="font-size: 12pt; font-family: "Times New Roman","serif";">We | ||
have | have | ||
- | modified this protein to Biobrick standard, Tom Knights Standard.</span></i><span | + | modified this protein to Biobrick standard, Tom Knights Standard.<br> |
+ | For more information go to: <a | ||
+ | href="http://partsregistry.org/wiki/index.php/Part:BBa_K265008">BBa_K265008</a> </span></i><span | ||
style="font-size: 12pt; font-family: "Times New Roman","serif";"> <o:p></o:p></span></p> | style="font-size: 12pt; font-family: "Times New Roman","serif";"> <o:p></o:p></span></p> | ||
<div class="MsoNormal" | <div class="MsoNormal" | ||
Line 177: | Line 179: | ||
have | have | ||
modified this protein to Biobrick standard, Tom Knights Standard.</span></i><span | modified this protein to Biobrick standard, Tom Knights Standard.</span></i><span | ||
- | style="font-size: 12pt; font-family: "Times New Roman","serif";"> <o:p></o:p></span>< | + | style="font-size: 12pt; font-family: "Times New Roman","serif";"> <o:p></o:p></span><br> |
- | + | <i><span | |
style="font-size: 12pt; font-family: "Times New Roman","serif";">Note: | style="font-size: 12pt; font-family: "Times New Roman","serif";">Note: | ||
“It has | “It has | ||
Line 184: | Line 186: | ||
sorted | sorted | ||
and incorporated into this membrane” (10)</span></i><span | and incorporated into this membrane” (10)</span></i><span | ||
- | style="font-size: 12pt; font-family: "Times New Roman","serif";"> <o:p></o:p></span>< | + | style="font-size: 12pt; font-family: "Times New Roman","serif";"> <o:p></o:p></span><br> |
- | + | <i><span | |
style="font-size: 12pt; font-family: "Times New Roman","serif";">For | style="font-size: 12pt; font-family: "Times New Roman","serif";">For | ||
more | more | ||
- | information go to:</span></i><span | + | information go to:<a |
+ | href="http://partsregistry.org/wiki/index.php/Part:BBa_K103006"> | ||
+ | BBa_K103006</a></span></i><span | ||
style="font-size: 12pt; font-family: "Times New Roman","serif";"> <a | style="font-size: 12pt; font-family: "Times New Roman","serif";"> <a | ||
href="http://partsregistry.org/wiki/index.php?title=Part:BBa_J36836"><i><span | href="http://partsregistry.org/wiki/index.php?title=Part:BBa_J36836"><i><span | ||
- | style="color: blue;"> | + | style="color: blue;"></span></i></a><o:p></o:p></span></p> |
<div class="MsoNormal" | <div class="MsoNormal" | ||
style="margin-bottom: 0.0001pt; text-align: center; line-height: normal;" | style="margin-bottom: 0.0001pt; text-align: center; line-height: normal;" | ||
Line 203: | Line 207: | ||
style="font-size: 12pt; font-family: "Times New Roman","serif";">Ribosome | style="font-size: 12pt; font-family: "Times New Roman","serif";">Ribosome | ||
Binding site number 32 (BBa_J61132) | Binding site number 32 (BBa_J61132) | ||
- | from the registry is being used in our secretion system. <o:p></o:p></span>< | + | from the registry is being used in our secretion system. <o:p></o:p></span><br> |
- | + | <i><span | |
style="font-size: 12pt; font-family: "Times New Roman","serif";">For | style="font-size: 12pt; font-family: "Times New Roman","serif";">For | ||
more | more | ||
information go to:</span></i><span | information go to:</span></i><span | ||
- | style="font-size: 12pt; font-family: "Times New Roman","serif";"> <a | + | style="font-size: 12pt; font-family: "Times New Roman","serif";"> <big><a |
+ | href="http://partsregistry.org/wiki/index.php/Part:BBa_J61132"><small><span | ||
+ | style="font-style: italic;">BBa_J61132</span></small></a></big><a | ||
href="http://partsregistry.org/wiki/index.php/Part:BBa_J61132"><i><span | href="http://partsregistry.org/wiki/index.php/Part:BBa_J61132"><i><span | ||
- | style="color: blue;"> | + | style="color: blue;"></span></i></a><o:p></o:p></span></p> |
<div class="MsoNormal" | <div class="MsoNormal" | ||
style="margin-bottom: 0.0001pt; text-align: center; line-height: normal;" | style="margin-bottom: 0.0001pt; text-align: center; line-height: normal;" | ||
Line 221: | Line 227: | ||
style="font-size: 12pt; font-family: "Times New Roman","serif";">We | style="font-size: 12pt; font-family: "Times New Roman","serif";">We | ||
are using BBa_B0015, a double terminator, as | are using BBa_B0015, a double terminator, as | ||
- | our terminator in both our secretion and pH system.<o:p></o:p></span>< | + | our terminator in both our secretion and pH system.<o:p></o:p></span><br> |
- | + | <i><span | |
style="font-size: 12pt; font-family: "Times New Roman","serif";">For | style="font-size: 12pt; font-family: "Times New Roman","serif";">For | ||
more | more | ||
information go to:</span></i><span | information go to:</span></i><span | ||
style="font-size: 12pt; font-family: "Times New Roman","serif";"> <a | style="font-size: 12pt; font-family: "Times New Roman","serif";"> <a | ||
+ | href="http://partsregistry.org/wiki/index.php?title=Part:BBa_B0015"><span | ||
+ | style="font-style: italic;">BBa_B0015</span></a> <a | ||
href="http://partsregistry.org/wiki/index.php?title=Part:BBa_B0015"><i><span | href="http://partsregistry.org/wiki/index.php?title=Part:BBa_B0015"><i><span | ||
- | style="color: blue;"> | + | style="color: blue;"></span></i></a><o:p></o:p></span></p> |
<div class="MsoNormal" | <div class="MsoNormal" | ||
style="margin-bottom: 0.0001pt; text-align: center; line-height: normal;" | style="margin-bottom: 0.0001pt; text-align: center; line-height: normal;" | ||
Line 240: | Line 248: | ||
are using Green Fluorescent Protein as a | are using Green Fluorescent Protein as a | ||
reporter that also serves as a small protein in testing our secretion | reporter that also serves as a small protein in testing our secretion | ||
- | system.<o:p></o:p></span></p> | + | system.<br> |
+ | <span style="font-style: italic;">For more informaiton go to: </span><a | ||
+ | style="font-style: italic;" | ||
+ | href="http://partsregistry.org/wiki/index.php/Part:BBa_K265003">BBa_K265003</a><span | ||
+ | style="font-style: italic;"> </span><o:p></o:p></span></p> | ||
<div class="MsoNormal" | <div class="MsoNormal" | ||
style="margin-bottom: 0.0001pt; text-align: center; line-height: normal;" | style="margin-bottom: 0.0001pt; text-align: center; line-height: normal;" | ||
Line 252: | Line 264: | ||
is a firefly protein that also | is a firefly protein that also | ||
fluoresces, so it serves as a reporter as well as a testable large | fluoresces, so it serves as a reporter as well as a testable large | ||
- | protein. <o:p></o:p></span></p> | + | protein.<br> |
+ | <span style="font-style: italic;">For more information go to: <a | ||
+ | href="http://partsregistry.org/wiki/index.php/Part:BBa_I712019">BBa_1712019</a></span> | ||
+ | <o:p></o:p></span></p> | ||
<div class="MsoNormal" | <div class="MsoNormal" | ||
style="margin-bottom: 0.0001pt; text-align: center; line-height: normal;" | style="margin-bottom: 0.0001pt; text-align: center; line-height: normal;" | ||
Line 265: | Line 280: | ||
part registry.<br> | part registry.<br> | ||
</span><i><span | </span><i><span | ||
- | style="font-size: 13pt; font-family: "Times New Roman","serif";"> | + | style="font-size: 13pt; font-family: "Times New Roman","serif";"></span></i><i><span |
- | </span></i><i><span | + | style="font-size: 12pt; font-family: "Times New Roman","serif";">For |
- | style="font-size: 12pt; font-family: "Times New Roman","serif";"> | + | more information go to:<a |
- | + | href="http://partsregistry.org/wiki/index.php/Part:BBa_R0010"> | |
- | + | BBa_R0010</a><br> | |
+ | </span></i><span | ||
style="font-size: 12pt; font-family: "Times New Roman","serif";"><a | style="font-size: 12pt; font-family: "Times New Roman","serif";"><a | ||
href="http://partsregistry.org/wiki/index.php?title=Part:BBa_R0010"><i><span | href="http://partsregistry.org/wiki/index.php?title=Part:BBa_R0010"><i><span | ||
- | style="color: blue;"> | + | style="color: blue;"></span></i></a><o:p></o:p></span></p> |
<div class="MsoNormal" | <div class="MsoNormal" | ||
style="margin-bottom: 0.0001pt; text-align: center; line-height: normal;" | style="margin-bottom: 0.0001pt; text-align: center; line-height: normal;" | ||
Line 285: | Line 301: | ||
INPNC, contains a cleavable site that allows the target fusion protein | INPNC, contains a cleavable site that allows the target fusion protein | ||
to | to | ||
- | ‘secrete’ from INPNC. We will do the same with OmpA. <o:p></o:p></span>< | + | ‘secrete’ from INPNC. We will do the same with OmpA. <o:p></o:p></span><br> |
- | + | <i><span | |
style="font-size: 12pt; font-family: "Times New Roman","serif";">We | style="font-size: 12pt; font-family: "Times New Roman","serif";">We | ||
have | have | ||
- | modified this protein to Biobrick standard, Tom Knights Standard.</span></i><span | + | modified this protein to Biobrick standard, Tom Knights Standard.<br> |
+ | For more infromation go to :<a | ||
+ | href="http://partsregistry.org/wiki/index.php/Part:BBa_K265002">BBa_K265002</a></span></i><span | ||
style="font-size: 12pt; font-family: "Times New Roman","serif";"> <o:p></o:p></span></p> | style="font-size: 12pt; font-family: "Times New Roman","serif";"> <o:p></o:p></span></p> | ||
<div class="MsoNormal" | <div class="MsoNormal" | ||
Line 296: | Line 314: | ||
style="font-size: 12pt; font-family: "Times New Roman","serif";"> | style="font-size: 12pt; font-family: "Times New Roman","serif";"> | ||
<hr align="center" size="2" width="100%"></span></div> | <hr align="center" size="2" width="100%"></span></div> | ||
- | + | <a name="His"></a><b><span | |
style="font-size: 13pt; font-family: "Times New Roman","serif";">6-His | style="font-size: 13pt; font-family: "Times New Roman","serif";">6-His | ||
Tag</span></b><span | Tag</span></b><span | ||
Line 304: | Line 322: | ||
Blotting if our fluorescent reporters are not expressed as highly as we | Blotting if our fluorescent reporters are not expressed as highly as we | ||
would | would | ||
- | like. <o:p></o:p></span>< | + | like. <o:p></o:p></span><br> |
- | < | + | <small><i><span |
style="font-size: 12pt; font-family: "Times New Roman","serif";">Note: | style="font-size: 12pt; font-family: "Times New Roman","serif";">Note: | ||
We are | We are | ||
using this tag, just in case if the GFP or Luciferase does not work | using this tag, just in case if the GFP or Luciferase does not work | ||
under a | under a | ||
- | plate reader.</span></i | + | plate reader.</span></i></small> |
- | + | ||
<div class="MsoNormal" | <div class="MsoNormal" | ||
style="margin-bottom: 0.0001pt; text-align: center; line-height: normal;" | style="margin-bottom: 0.0001pt; text-align: center; line-height: normal;" |
Revision as of 07:12, 2 October 2009
Secretion Model 1:
Click on an individual part for more information.
INPNC:Ice-nucleation
protein (INP) from Pseudomonas
Syringae was suggested to be used for display of foreign proteins on
the
surface of E. coli(7).Furthermore, researches have shown that
an INP
derivative constituting the N-and C-terminal domains can and has been
used to
display foreign proteins on the surface of E. coli(9). In our
project we
are intending to harness and make use of this feature by fusing a
specific
protein to it.
We
have
modified this protein to Biobrick standard, Tom Knights Standard.
For more information go to: BBa_K265008
OmpA: OmpA
is one of the proteins on the outer
membrane of E. coli (13). OmpA has been found to be useful as
utilizable
fusion part that can fuse our protein to and display on the surface of E.
coli. This part has already been documented on the parts registry;
however,
it has not been tested via fusion with a target protein linked with a
cleavable
signal sequence.
We
have
modified this protein to Biobrick standard, Tom Knights Standard.
Note:
“It has
remained essentially unknown how proteins of E. coli outer membrane are
sorted
and incorporated into this membrane” (10)
For
more
information go to:
BBa_K103006
RBS:
Ribosome
Binding site number 32 (BBa_J61132)
from the registry is being used in our secretion system.
For
more
information go to: BBa_J61132
Terminator: We
are using BBa_B0015, a double terminator, as
our terminator in both our secretion and pH system.
For
more
information go to: BBa_B0015
GFP: We
are using Green Fluorescent Protein as a
reporter that also serves as a small protein in testing our secretion
system.
For more informaiton go to: BBa_K265003
Luciferase: Luciferase
is a firefly protein that also
fluoresces, so it serves as a reporter as well as a testable large
protein.
For more information go to: BBa_1712019
LacI: One
inducible Promoter which was found in the
part registry.
For
more information go to:
BBa_R0010
SS:This
signal sequence, when placed between
INPNC, contains a cleavable site that allows the target fusion protein
to
‘secrete’ from INPNC. We will do the same with OmpA.
We
have
modified this protein to Biobrick standard, Tom Knights Standard.
For more infromation go to :BBa_K265002
Note: We are using this tag, just in case if the GFP or Luciferase does not work under a plate reader.