Team:Alberta/Project/Modeling/start

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(Difference between revisions)

Revision as of 00:22, 18 October 2009

% start script

changeCobraSolver('glpk'); %can use any solver that is supported model = readCbModel() %('Ec_iAF1260_flux1.xml') solution1 = optimizeCbModel(model, 'max', 'false', 'false'); essgenes=cell(1) InitialGrowthRate = solution1.f

@@ Line 1: / Line 1: @@
- %start.m script
+% start script
- changeCobraSolver('glpk');
- model = readCbModel() %('Ec_iAF1260_flux1.xml')
+changeCobraSolver('glpk'); %can use any solver that is supported
- solution1 = optimizeCbModel(model, 'max', 'false', 'false');
+model = readCbModel() %('Ec_iAF1260_flux1.xml')
- essgenes=cell(1)
+solution1 = optimizeCbModel(model, 'max', 'false', 'false');
- fValue = solution1.f
+essgenes=cell(1)
- startSays = 'Put your researched/suspected essential genes into essgenes for later comparison!'
+InitialGrowthRate = solution1.f