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Team:Heidelberg/k4l1um
From 2009.igem.org
(Difference between revisions)
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| Line 40: | Line 40: | ||
Lab: LV, SH, CZ | Lab: LV, SH, CZ | ||
| - | * | + | * DNA synthesis (JeT, cFos, Min) |
* Purification of cDNA via 2% / 3% agarosegel | * Purification of cDNA via 2% / 3% agarosegel | ||
=> Only bands at ca. 50 Bp => no successful amplification | => Only bands at ca. 50 Bp => no successful amplification | ||
| Line 53: | Line 53: | ||
* No transformations could be observed | * No transformations could be observed | ||
* Replace Phsuion stocks to Phusion Master Mix from Nathan | * Replace Phsuion stocks to Phusion Master Mix from Nathan | ||
| - | * Repeat | + | * Repeat DNA synthesis with a different protocol: 1:10 - 1:1000 dilution of Oligos, 95° 5', 7* [95° 45'' 58° 45'' 72° 1'], add 1:10 diluted primers, 95° 5' 25* same temperatures |
* Annealing successful for JeT and Min | * Annealing successful for JeT and Min | ||
Annealing might not have been successful with Fos beacuse it contains a very repetetive proximal promoter. | Annealing might not have been successful with Fos beacuse it contains a very repetetive proximal promoter. | ||
| Line 61: | Line 61: | ||
* PCR worked for pcDNA5FRT but not for mcherry | * PCR worked for pcDNA5FRT but not for mcherry | ||
* DpnI digest of pcDNA5FRT 1,3,4,6 | * DpnI digest of pcDNA5FRT 1,3,4,6 | ||
| + | |||
| + | == 6-18-2009 == | ||
| + | |||
| + | Lab: LV, SH | ||
| + | * DNA synthesis for Fos (proximal) and Fos (core) | ||
| + | * Transformation of DH5a with pcDNA/FRT ΔPstI | ||
Revision as of 09:31, 19 June 2009
Contents |
6-15-2009
Lab: LV, SH, CZ
SH:
- Miniprep of GFP template plasmid, pcDNA5/FRT
| Nr | pcDNA5/FRT | GFP |
|---|---|---|
| 1 | 4,7 | 39,7 |
| 2 | 5,9 | 14,9 |
| 3 | 3,7 | 3,8 |
| 4 | 5,0 | 7,8 |
- Maxiprep pcDNA/FRT 188.7ng/µL
LV:
- Extraction of CMV promoter from 2008 distribution
- Transformation of DH5a cell with CMV promoter
- portzughtr
6-16-2009
Lab: LV, SH, CZ
- DNA synthesis (JeT, cFos, Min)
- Purification of cDNA via 2% / 3% agarosegel
=> Only bands at ca. 50 Bp => no successful amplification
- Site directed mutagenesis of pcDNA5/FRT and mcherry
- Dpn1 digestion
- Transformation of DH5a
6-17-2009
Lab: LV, SH
- No transformations could be observed
- Replace Phsuion stocks to Phusion Master Mix from Nathan
- Repeat DNA synthesis with a different protocol: 1:10 - 1:1000 dilution of Oligos, 95° 5', 7* [95° 45 58° 45 72° 1'], add 1:10 diluted primers, 95° 5' 25* same temperatures
- Annealing successful for JeT and Min
Annealing might not have been successful with Fos beacuse it contains a very repetetive proximal promoter.
- gel purfifcation of JeT and Min
- Repeat PCR of pcDNA5/FRT and mcherry with lower annealing temperature (58°C) and fresh Polymerase: Follow PCR protcol from Strategene site directed mutagenesis kit.
mcherry PCR might not have been successful because we used a template we didn't make ourselves - does it contain TE?
- PCR worked for pcDNA5FRT but not for mcherry
- DpnI digest of pcDNA5FRT 1,3,4,6
6-18-2009
Lab: LV, SH
- DNA synthesis for Fos (proximal) and Fos (core)
- Transformation of DH5a with pcDNA/FRT ΔPstI
