Template:Stanford Parts Table 0809

From 2009.igem.org

(Difference between revisions)

Revision as of 00:29, 19 October 2009

Part #	Name	Part Description	Type

BBa_K223040	SoxR Gene	This part produces the SoxR protein, which in the presence of oxidative stresses, such as paraquat and nitric oxide, binds with high affinity to the SoxS promoter. The SoxR generator, when coupled with the SoxS promoter, can be utilized as an inducible sensor for oxidative stress.	Basic
Bba_K223041	SoxS promoter	The SoxS promoter is activated by the SoxR protein in the presence of oxidative stress, such as Paraquat or Nitric Oxide. It has a high affinity binding with the SoxR protein. It can be used in conjunction with the SoxR gene as an inducible sensor for oxidative stress.	Basic
Bba_K223042	Blh Gene	The Blh gene cleaves beta-carotene into retinal. It can be used in the pathway for the production of retinoic acid from beta-carotene in conjunction with the RALDH II genes.	Basic
Bba_K223043	RALDH II Gene	The Raldh II gene converts retinal into retinoic acid. It is helpful if used in conjunction with the Blh gene for the entire process of converting beta-carotene into retinoic acid.	Basic
Bba_K223044	SoxR-SoxS System	This entire system works as a superoxide sensor. Superoxides activate the SoxR protein to bind with the SoxS Promoter and begin transcription of downstream genes. It is an inducible sensor.	Composite
Bba_K223045	RALDH II Intermediate	Working composite part with a ribosome binding site and terminator.	Intermediate
Bba_K223046	SoxR/SoxS- GFP	SoxR - SoxS Promoter System with downstream GFP production. This was used to characterize the inducible oxidative stress signal when activating the SoxR-SoxS promoter system.	Composite
Bba_K223047	Lacl Promoter-SoxR/SoxS-GFP	This is the SoxR-SoxS inducible promoter system with downstream production of GFP in order to characterize the device. We used the lacl regulated promoter.	Composite
Bba_K223048	Blh and RALDH II	This is the RBS- Blh- RBS- RALDH II- TT generator. Both of these parts are important in the cleaving of beta carotene into retinoic acid.	Intermediate
Bba_K223049	SoxR - SoxS- Blh and RALDH II	This is the superoxide inducible SoxR-SoxS promoter system coupled with the production of Blh and RALDH II genes for the cleaving of beta carotene into retinoic acid.	Composite
Bba_K223050	Lacl Promoter-SoxR - SoxS -Blh and RALDH II	Same as BBa_K223049 with the addition of an inducible lacl promoter.	Composite
Bba_K223051	Fill in
Bba_K223052	Fill in
Bba_K223053	Fill in
Bba_K223054	Fill in
Bba_K223055	Fill in
Bba_K223056	Fill in
Bba_K223057	Fill in
Bba_K223058	Fill in
Bba_K223059	Fill in
Bba_K223060	Fill in

@@ Line 15: / Line 15: @@
 </TD><TD>Basic</TD></TR>
 <TR><TD>Bba_K223043</TD><TD>RALDH II Gene</TD><TD>The Raldh II gene converts retinal into retinoic acid. It is helpful if used in conjunction with the Blh gene for the entire process of converting beta-carotene into retinoic acid.</TD><TD>Basic</TD></TR>
-<TR><TD>Bba_K223044</TD><TD>SoxR-SoxS Promoter System</TD><TD>This entire system works as a superoxide sensor. Superoxides activate the SoxR protein to bind with the SoxS Promoter and begin transcription of downstream genes. It is an inducible sensor.</TD><TD>Composite</TD></TR>
+<TR><TD>Bba_K223044</TD><TD>SoxR-SoxS System</TD><TD>This entire system works as a superoxide sensor. Superoxides activate the SoxR protein to bind with the SoxS Promoter and begin transcription of downstream genes. It is an inducible sensor.</TD><TD>Composite</TD></TR>
-<TR><TD>Bba_K223045</TD><TD>RBS- RALDH II - TT</TD><TD>Working composite part with a ribosome binding site and terminator.</TD><TD>Intermediate</TD></TR>
+<TR><TD>Bba_K223045</TD><TD> RALDH II Intermediate</TD><TD>Working composite part with a ribosome binding site and terminator.</TD><TD>Intermediate</TD></TR>
-<TR><TD>Bba_K223046</TD><TD>SoxR/SoxS with GFP Reporter</TD><TD>SoxR - SoxS Promoter System with downstream GFP production. This was used to characterize the inducible oxidative stress signal when activating the SoxR-SoxS promoter system.</TD><TD>Composite</TD></TR>
+<TR><TD>Bba_K223046</TD><TD>SoxR/SoxS- GFP</TD><TD>SoxR - SoxS Promoter System with downstream GFP production. This was used to characterize the inducible oxidative stress signal when activating the SoxR-SoxS promoter system.</TD><TD>Composite</TD></TR>
-<TR><TD>Bba_K223047</TD><TD>Lacl Promoter with SoxR/SoxS and GFP Reporter</TD><TD>This is the SoxR-SoxS inducible promoter system with downstream production of GFP in order to characterize the device. We used the lacl regulated promoter.</TD><TD>Composite</TD></TR>
+<TR><TD>Bba_K223047</TD><TD>Lacl Promoter-SoxR/SoxS-GFP</TD><TD>This is the SoxR-SoxS inducible promoter system with downstream production of GFP in order to characterize the device. We used the lacl regulated promoter.</TD><TD>Composite</TD></TR>
-<TR><TD>Bba_K223048</TD><TD>Blh and RALDH II Coupled Generator</TD><TD>This is the RBS- Blh- RBS- RALDH II- TT generator. Both of these parts are important in the cleaving of beta carotene into retinoic acid.</TD><TD>Intermediate</TD></TR>
+<TR><TD>Bba_K223048</TD><TD>Blh and RALDH II</TD><TD>This is the RBS- Blh- RBS- RALDH II- TT generator. Both of these parts are important in the cleaving of beta carotene into retinoic acid.</TD><TD>Intermediate</TD></TR>
-<TR><TD>Bba_K223049</TD><TD>SoxR - SoxS System with Blh and RALDH II system</TD><TD>This is the superoxide inducible SoxR-SoxS promoter system coupled with the production of Blh and RALDH II genes for the cleaving of beta carotene into retinoic acid.</TD><TD>Composite</TD></TR>
+<TR><TD>Bba_K223049</TD><TD>SoxR - SoxS- Blh and RALDH II</TD><TD>This is the superoxide inducible SoxR-SoxS promoter system coupled with the production of Blh and RALDH II genes for the cleaving of beta carotene into retinoic acid.</TD><TD>Composite</TD></TR>
-<TR><TD>Bba_K223050</TD><TD>Lacl Promoter with SoxR - SoxS System with Blh and RALDH II system</TD><TD>Same as BBa_K223049 with the addition of an inducible lacl promoter.</TD><TD>Composite</TD></TR>
+<TR><TD>Bba_K223050</TD><TD>Lacl Promoter-SoxR - SoxS -Blh and RALDH II </TD><TD>Same as BBa_K223049 with the addition of an inducible lacl promoter.</TD><TD>Composite</TD></TR>
 <TR><TD>Bba_K223051</TD><TD>Fill in</TD><TD></TD><TD></TD></TR>
 <TR><TD>Bba_K223052</TD><TD>Fill in</TD><TD></TD><TD></TD></TR>