Team:USTC Software/Project

From 2009.igem.org

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:Do you want to enjoy more sunshine rather than fail and fail again in lab?  
:Do you want to enjoy more sunshine rather than fail and fail again in lab?  
:Do you want to design a biological system that exhibits dynamical behaviors you desire?   
:Do you want to design a biological system that exhibits dynamical behaviors you desire?   
:Do you want to try different ways to test your designs?
:Do you want to try different ways to test your designs?
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:Follow [http://parts.mit.edu/igem07/index.php/USTC/DingBo Dr. Ding], our ABCD will try to make your dreams come true.
 
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:Wait!It would be much more efficient to get some general ideas about our ABCD firstly: [https://2009.igem.org/Team:USTC_Software/hoWMMD Mathematical Model], [https://2009.igem.org/Team:USTC_Software/hoWDesign Design Level], [https://2009.igem.org/Team:USTC_Software/hoWDesign Design Type].
 
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:Follow [http://parts.mit.edu/igem07/index.php/USTC/DingBo Dr. Ding], our ABCD will try to make your dreams come true.
 +
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:Wait!It would be much more efficient to get some general ideas about our ABCD firstly: [https://2009.igem.org/Team:USTC_Software/hoWMMD Mathematical Model], [https://2009.igem.org/Team:USTC_Software/hoWDesign Design Level], [https://2009.igem.org/Team:USTC_Software/hoWDesign Design Type].
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:Now, tell ABCD what you want. There are different ways for you to [https://2009.igem.org/Team:USTC_Software/hoWIO Input] your desired dynamics to ABCD.  
:Now, tell ABCD what you want. There are different ways for you to [https://2009.igem.org/Team:USTC_Software/hoWIO Input] your desired dynamics to ABCD.  
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:Are there any [https://2009.igem.org/Team:USTC_Software/hoWRestriction restrictions] on this biological network happen to meet your needs? Good news! Dr. Ding will tell you how to complete this in ABCD.  
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:Are there any [https://2009.igem.org/Team:USTC_Software/hoWRestriction restrictions] on this biological network that happen to meet your needs? Good news! Dr. Ding will tell you how to complete this in ABCD.  
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:How can you find real components to construct the system. Thanks to [http://partsregistry.org/Main_Page BioBricks]. Our [https://2009.igem.org/Team:USTC_Software/hoWDatabase database] makes it possible to retrieve them while some new standards should be proposed.
:How can you find real components to construct the system. Thanks to [http://partsregistry.org/Main_Page BioBricks]. Our [https://2009.igem.org/Team:USTC_Software/hoWDatabase database] makes it possible to retrieve them while some new standards should be proposed.
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:Also, if our memory serves right, there are quite a few brilliant software packages specified at BioBrick organizing and related management, for example, [https://2008.igem.org/Team:UC_Berkeley_Tools Clotho] from Berkeley's dry team, 2008. If combined with these softwares, the construction will be even more applicable.
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:Now, you may feel happy to realize a function such as [https://2009.igem.org/Team:USTC_Software/WhatDemo#Example_1._Synthetic_Oscillator oscillation], [https://2009.igem.org/Team:USTC_Software/WhatDemo#Example_2:_Perfect_Adaptation perfect adaptation] or  [https://2009.igem.org/Team:USTC_Software/WhatDemo#Example_3._Bistable_Toggle_Switch bistability] following our solutions. But we still hold earnest expectations. Is it possible to complete the fabrication automatically in the [https://2009.igem.org/Team:USTC_Software/Perspective future]?
:Now, you may feel happy to realize a function such as [https://2009.igem.org/Team:USTC_Software/WhatDemo#Example_1._Synthetic_Oscillator oscillation], [https://2009.igem.org/Team:USTC_Software/WhatDemo#Example_2:_Perfect_Adaptation perfect adaptation] or  [https://2009.igem.org/Team:USTC_Software/WhatDemo#Example_3._Bistable_Toggle_Switch bistability] following our solutions. But we still hold earnest expectations. Is it possible to complete the fabrication automatically in the [https://2009.igem.org/Team:USTC_Software/Perspective future]?

Revision as of 15:42, 20 October 2009


About Team and People Project Standard Notebook Demo Safety External Links


A First Introduction - Dr. Ding's One Summer

DBChe1.png

Do you want to enjoy more sunshine rather than fail and fail again in lab?
Do you want to design a biological system that exhibits dynamical behaviors you desire?
Do you want to try different ways to test your designs?

Follow [http://parts.mit.edu/igem07/index.php/USTC/DingBo Dr. Ding], our ABCD will try to make your dreams come true.
Wait!It would be much more efficient to get some general ideas about our ABCD firstly: Mathematical Model, Design Level, Design Type.
Now, tell ABCD what you want. There are different ways for you to Input your desired dynamics to ABCD.

DBChe2.png

DBChe3.png

Are there any restrictions on this biological network that happen to meet your needs? Good news! Dr. Ding will tell you how to complete this in ABCD.

Our ABCD engine starts working. The state of art algorithms we implement in ABCD will make design process automatically and different feasible solutions will be generated.

DBChe4.png

DBChe5.png

How can you find real components to construct the system. Thanks to [http://partsregistry.org/Main_Page BioBricks]. Our database makes it possible to retrieve them while some new standards should be proposed.
Also, if our memory serves right, there are quite a few brilliant software packages specified at BioBrick organizing and related management, for example, Clotho from Berkeley's dry team, 2008. If combined with these softwares, the construction will be even more applicable.

Now, you may feel happy to realize a function such as oscillation, perfect adaptation or bistability following our solutions. But we still hold earnest expectations. Is it possible to complete the fabrication automatically in the future?

DBChe6.png