Team:IPN-UNAM-Mexico/Notebook

From 2009.igem.org

(Difference between revisions)
Line 9: Line 9:
<h1>[[Image:Month-icon.png | 50px]] July </h1>
<h1>[[Image:Month-icon.png | 50px]] July </h1>
-
07-July-2009
+
'''''07-July-2009'''''
We digest the follow biobriks with ECORI (E), SPEI (S), and XBAI (X).
We digest the follow biobriks with ECORI (E), SPEI (S), and XBAI (X).
Line 93: Line 93:
|align="right" | 20μl
|align="right" | 20μl
|}
|}
 +
 +
 +
'''''08-July-2009'''''
 +
 +
We carried out the restrictions on a 10 wells agarosa gel 40 min.
 +
3μl DNA  2μl Buffer.
 +
We have not  DNA on the Gels maybe the DNA volume is so low.  We try again with
 +
20μl DNA  3μl Buffer
 +
We run on  only Plasmidic DNA  but we have not DNA.
 +
 +
'''''09-July-2009'''''
 +
 +
We start from cero, and take off DNA from the folder plateing R0079, C0178, C0179, C0060, B0034, I739001 biobriks,
 +
We left 16 hours in 37º camera.
 +
 +
'''''10-July-2009'''''
 +
 +
We don’t have transform cells in this point we have to delay and request 2009 catalog.
 +
 +
 +
'''''28-July-2009'''''
 +
 +
With the 2009 catalog we retake the work and take on the biobriks we need. First of all we did a test to be sure that the biobriks worked properly for this we take a biobrik with RFP reporter (BBa_I3522) and plate, we incubate 17 hours in 37º camera.
 +
 +
 +
'''''29-July-2009'''''
 +
 +
The transformation was successful we are sure the biobricks and method works and we proceed to take off our biobricks as next chart.
 +
 +
 +
{| border="0.5"
 +
!Number
 +
!Biobrick
 +
|-
 +
|2
 +
|BBa_R0079
 +
|-
 +
|3
 +
|BBa_F1610
 +
|-
 +
|4
 +
|BBa_K091146
 +
|-
 +
|5
 +
|BBa_K093005
 +
|-
 +
|6
 +
|BBa_K081016
 +
|-
 +
|7
 +
|BBa_EC840
 +
|-
 +
|8
 +
|BBa_K081009
 +
|-
 +
|9
 +
|BBa_R0051
 +
|-
 +
|10
 +
|BBa_J06800
 +
|-
 +
|11
 +
|BBa_Q04121
 +
|-
 +
|12
 +
|BBa_B0034
 +
|-
 +
|13
 +
|BBa_C0079
 +
|-
 +
|14
 +
|BBa_C0179
 +
|-
 +
|15
 +
|BBa_B0015
 +
|-
 +
|16
 +
|BBa_K081018
 +
|-
 +
|17
 +
|BBa_K116640
 +
|}
 +
 +
For transformation we use the same method as follow.
 +
 +
Elusion: 3μl DNA from the well, and get in Eppendorf 1.5 ml with competent cells. We use electoporation shock to transform and recovery in  LB ampr  1 hour and a half  then we plate on petri dishes and get  incubate 17 hours.
 +
 +
 +
'''''31-July-2009'''''
 +
 +
We plated  Top 10 biobricks F1610, K091146, K081016, K081009, R0051, K081018 and get incube 17 hours

Revision as of 17:20, 20 October 2009


BannerUNAM.jpg

As summer proyect our experimental work began at 07 - july - 2009 using 2008 bioparts catalog, unfurtunly it dosen’t work properly, we had to much troubles to take out DNA and transform, E. Coli for this we had to delay and request 2009 catalog.

Our proyect uses 29 bioparts, 12 ligations and diferent strategys to make it functional as follow:

Month-icon.png June

Month-icon.png July

07-July-2009

We digest the follow biobriks with ECORI (E), SPEI (S), and XBAI (X).

Biobrick Enzime restriction
R0079 E, S
F1610 E, X
B0034 E, S
C0078 E, X
C0079 E, X
B0015 E, X


We propose this restrictions for standar assembly for the digest we use a 17 hours incubation at 37º camera. Digest Mix:


ERCO RI - SPEI Per reaction
Plasmidic DNA 3μl
Enzima ECORI 2μl
Enzima SPEI 2μl
Buffer NBE 2μl
BSA 0.5μl
H2O 10.5μl
Total 20μl


ECORI - XBAI Per reaction
Plasmidic DNA 3μl
Enzima ECORI 2μl
Enzima XBAI 2μl
Buffer NBE 2μl
BSA 0.5μl
H20 10.5μl
Total 20μl


08-July-2009

We carried out the restrictions on a 10 wells agarosa gel 40 min. 3μl DNA 2μl Buffer. We have not DNA on the Gels maybe the DNA volume is so low. We try again with 20μl DNA 3μl Buffer We run on only Plasmidic DNA but we have not DNA.

09-July-2009

We start from cero, and take off DNA from the folder plateing R0079, C0178, C0179, C0060, B0034, I739001 biobriks, We left 16 hours in 37º camera.

10-July-2009

We don’t have transform cells in this point we have to delay and request 2009 catalog.


28-July-2009

With the 2009 catalog we retake the work and take on the biobriks we need. First of all we did a test to be sure that the biobriks worked properly for this we take a biobrik with RFP reporter (BBa_I3522) and plate, we incubate 17 hours in 37º camera.


29-July-2009

The transformation was successful we are sure the biobricks and method works and we proceed to take off our biobricks as next chart.


Number Biobrick
2 BBa_R0079
3 BBa_F1610
4 BBa_K091146
5 BBa_K093005
6 BBa_K081016
7 BBa_EC840
8 BBa_K081009
9 BBa_R0051
10 BBa_J06800
11 BBa_Q04121
12 BBa_B0034
13 BBa_C0079
14 BBa_C0179
15 BBa_B0015
16 BBa_K081018
17 BBa_K116640

For transformation we use the same method as follow.

Elusion: 3μl DNA from the well, and get in Eppendorf 1.5 ml with competent cells. We use electoporation shock to transform and recovery in LB ampr 1 hour and a half then we plate on petri dishes and get incubate 17 hours.


31-July-2009

We plated Top 10 biobricks F1610, K091146, K081016, K081009, R0051, K081018 and get incube 17 hours


Month-icon.png August

Month-icon.png September

Month-icon.png October


Banner footer UNAM2.jpg

Retrieved from "http://2009.igem.org/Team:IPN-UNAM-Mexico/Notebook"