Minnesota/22 June 2009

(Difference between revisions)

Revision as of 19:46, 29 July 2009

Back to Notebook Home
Go to Previous Day (June 19)	Go to Next Day (June 23)

Here is the first incarnation of the TNN model (many future models will simply change this one):

Reaction	Forward Kinetic Constant	Reverse Kinetic Constant
RNAp + lacP + lacI4:lacO1 -> RNAp:lacP	6.23E+05
RNAp + lacP + lacO1 ↔ RNAp:lacP	1E+07	1
RNA:lacP -> RNAp:lacP*	.01
RNAp:lacP* -> lacP + lacO1 + RNAp:DNAgfp	30
RNAp:DNAgfp -> RNAp + gfp_mRNA	30
gfp_mRNA + rib -> rib:gfp_mRNA	100000
rib:gfp_mRNA -> rib:gfp_mRNA_1 + gfp_mRNA	33
rib:gfp_mRNA_1 -> rib + gfp	33
tetR2 + aTc ↔ tetR2:aTc	2E+09	4E-04
tetR2:aTc + aTc ↔ tetR2:aTc2	1E+08	1E-03
tetR2:aTc + tetO1 ↔ tetR2:tetO1:aTc	1E+08	1
tetR2:aTc2 + tetO1 ↔ tetR2:tetO1:aTc2	1E+08	1E+05
tetR2:tetO1 + aTc ↔ tetR2:tetO1:aTc	1E+08	1E-03
tetR2:tetO1:aTc + aTc ↔ tetR2:tetO1:aTc2	1E+08	1E-03
tetR2 -> Ø	2.89E-04
tetR2:aTc -> aTc	2.89E-04
tetR2:aTc2 -> 2 aTc	2.89E-04
tetR2 + nsDNA ↔ tetR2:nsDNA	1000	3.2409
tetR2:aTc + nsDNA ↔ tetR2:aTc:nsDNA	1000	3.2409
tetR2:aTc:nsDNA -> aTc + nsDNA	1.93E-04
tetR2:nsDNA -> nsDNA	1.93E-04
Ø -> tetR2	1E-11
Ø -> aTc	3.3E-04
gfp_mRNA -> Ø	1.16E-03
gfp -> Ø	3.21E-05

@@ Line 5: / Line 5: @@
 |'''[[Minnesota/19 June 2009|Go to Previous Day (June 19)]]'''|| width=158|'''[[Minnesota/23 June 2009|Go to Next Day (June 23)]]'''
 |}
-Here is the first incarnation of the model (many future models will simply change this one):
+Here is the first incarnation of the TNN model (many future models will simply change this one):
 {| class="wikitable" style="text-align:center" border = "1"
 |-