Team:BCCS-Bristol/Modeling
From 2009.igem.org
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- | * Fix BSim bug | + | * Fix BSim bug (short description here please :) [[User:Sr8243|Sr8243]] 15:59, 7 August 2009 (UTC)) |
* Understand how bacteria "tumble" under magnetic force | * Understand how bacteria "tumble" under magnetic force | ||
* Finish coding the magnetic force | * Finish coding the magnetic force |
Revision as of 15:59, 7 August 2009
BCCS-Bristol
iGEM 2009
iGEM 2009
Contents |
Workflow
- Study Team:BCCS-Bristol/Modeling/Ideas to understand high level development goals (you can add stuff to that page!)
- Decide the specifics of what needs to be done and add items to your to-do list. Ideally the items added should read like commit messages
- Commit to the [http://code.google.com/p/bsim-bccs/ subversion repository] and
strike outthe item on your to-do list, adding a reference to the commit number if possible e.g:-
Rename BSimObject to BSimParticler19
-
Todo list
Steve
- Meet Sean Davies Monday 7th Aug re: beads - try to bring some polystyrene beads
- Learn something more about bioscaffolds
- Contact Paris team re:video
- Decide whether we are talking at the synbio conference, if so, who is talking
- Identify what batch simulations we wish to carry out asap. See [1].
- If our paradigm is particle dynamics, interactions with solid boundaries (that have a shape) are making things more complicated than neccesary.. traer physics is proving a big inspiration, it's beautifully simple - following its lead I believe we could dramatically decrease the complexity of the bsim physics engine
- Study whether 3D implementation of newPosition in BSimBacteriaCreate is reasonable r28
- 3D tumbling in BSimBacteria r30
- 3D diffusion for BSimChemicalField r29
- 3D boundaries r34
- Remove author, date from headers?
- Further refactoring to achieve clear and consistent class-package naming: make toolbar a nested class of app?
- Are PART_PART, PART_BACT, PART_BEAD really neccesary?
- Add paper references to parameter values in the code using page from last year
Mattia
Emily
- Fix BSim bug (short description here please :) Sr8243 15:59, 7 August 2009 (UTC))
- Understand how bacteria "tumble" under magnetic force
- Finish coding the magnetic force
- Code half-coated bead